PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca122277G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | BES1 | ||||||||
Protein Properties | Length: 133aa MW: 14980.7 Da PI: 5.306 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 129.7 | 3.5e-40 | 56 | 128 | 1 | 73 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgs 73 gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ s Gh_Sca122277G01 56 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRS 128 6899*****************************************************************9655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 8.4E-36 | 58 | 127 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MDVKEEDDED EENGEKQIAA QMMIGVDEVM PSTSSSDQFQ YQPQLQEQVS NQSGGGGARR 60 SRPLEEKERT KLRERHRRAI TARILAGLRR HGNYNLRVRA DINDVIAALA REAGWVVLPD 120 GTTFPSRSQV LAF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM442256 | 9e-60 | AM442256.2 Vitis vinifera contig VV78X202994.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475207.1 | 2e-85 | PREDICTED: beta-amylase 7 isoform X2 | ||||
Swissprot | O80831 | 5e-52 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | A0A0D2MYZ1 | 5e-84 | A0A0D2MYZ1_GOSRA; Beta-amylase | ||||
STRING | Gorai.004G158600.1 | 3e-83 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2945 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 5e-36 | beta-amylase 7 |
Publications ? help Back to Top | |||
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