PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca103349G01 | ||||||||
Common Name | ERF10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 65aa MW: 7239.2 Da PI: 10.2847 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.5e-20 | 4 | 54 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f++ae Aa a+++a+ +++g Gh_Sca103349G01 4 SYRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDSAEAAAIAYDQAAFSMKG 54 69*******.**********44465..************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.23E-17 | 3 | 63 | No hit | No description |
PROSITE profile | PS51032 | 22.392 | 4 | 62 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-13 | 4 | 54 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-33 | 4 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-23 | 4 | 64 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-31 | 4 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-11 | 5 | 16 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-11 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
KEKSYRGVRK RPWGKYAAEI RDSTRNGVRV WLGTFDSAEA AAIAYDQAAF SMKGSLATLN 60 FPVEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-29 | 1 | 65 | 2 | 66 | ATERF1 |
3gcc_A | 2e-29 | 1 | 65 | 2 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430217 | 1e-102 | KF430217.1 Gossypium hirsutum transcription factor ERF10 (ERF10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314148.1 | 3e-40 | ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_012490691.1 | 3e-40 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_016708759.1 | 2e-40 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_017648633.1 | 3e-40 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 7e-37 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A0D2SD89 | 6e-39 | A0A0D2SD89_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8L6I7 | 6e-39 | A0A1U8L6I7_GOSHI; ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | A0A2P5SL98 | 6e-39 | A0A2P5SL98_GOSBA; Uncharacterized protein | ||||
TrEMBL | U5YF92 | 6e-39 | U5YF92_GOSHI; Transcription factor ERF10 | ||||
STRING | Gorai.007G145800.1 | 1e-39 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 2e-29 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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