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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_Sca094886G01 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | HB-other | ||||||||
| Protein Properties | Length: 52aa MW: 6087.75 Da PI: 4.8679 | ||||||||
| Description | HB-other family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 23.8 | 7.8e-08 | 4 | 29 | 30 | 55 |
HHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 30 reeLAkklgLterqVkvWFqNrRake 55
+ LA+++gL+++q+ +WF N+R ++
Gh_Sca094886G01 4 KLALAESTGLDQKQINNWFINQRKRH 29
5689*******************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF05920 | 5.4E-11 | 1 | 28 | IPR008422 | Homeobox KN domain |
| Gene3D | G3DSA:1.10.10.60 | 3.5E-15 | 1 | 33 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 10.463 | 1 | 32 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 1.46E-7 | 1 | 33 | No hit | No description |
| SuperFamily | SSF46689 | 6.84E-11 | 2 | 44 | IPR009057 | Homeodomain-like |
| PROSITE pattern | PS00027 | 0 | 7 | 30 | IPR017970 | Homeobox, conserved site |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 52 aa Download sequence Send to blast |
EADKLALAES TGLDQKQINN WFINQRKRHW KPSESMQFAV MDNLSGQFFS ED |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Ghi.1670 | 3e-86 | root| stem | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}. | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012479359.1 | 7e-30 | PREDICTED: homeobox protein knotted-1-like 6 | ||||
| Refseq | XP_016666045.1 | 7e-30 | PREDICTED: homeobox protein knotted-1-like 6 | ||||
| Refseq | XP_016692801.1 | 7e-30 | PREDICTED: homeobox protein knotted-1-like 6 | ||||
| Refseq | XP_017632201.1 | 7e-30 | PREDICTED: homeobox protein knotted-1-like 6 | ||||
| Swissprot | Q84JS6 | 1e-23 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
| TrEMBL | A0A0B0NTB3 | 1e-29 | A0A0B0NTB3_GOSAR; Homeobox protein knotted-1-like 6 | ||||
| TrEMBL | A0A0D2NER2 | 2e-28 | A0A0D2NER2_GOSRA; Uncharacterized protein | ||||
| TrEMBL | A0A0D2RNM8 | 2e-28 | A0A0D2RNM8_GOSRA; Uncharacterized protein | ||||
| TrEMBL | A0A1U8HJ09 | 2e-28 | A0A1U8HJ09_GOSHI; homeobox protein knotted-1-like 6 | ||||
| TrEMBL | A0A1U8JRA8 | 2e-28 | A0A1U8JRA8_GOSHI; homeobox protein knotted-1-like 6 | ||||
| TrEMBL | A0A2P5YAP5 | 1e-28 | A0A2P5YAP5_GOSBA; Uncharacterized protein | ||||
| STRING | Gorai.005G180500.1 | 3e-29 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM28887 | 3 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G23380.1 | 4e-26 | KNOTTED1-like homeobox gene 6 | ||||
| Publications ? help Back to Top | |||
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