PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca078296G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 111aa    MW: 12398 Da    PI: 10.2503
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca078296G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-105199348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Gh_Sca078296G01 51 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 99
                     7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.92644103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-1446106IPR009057Homeodomain-like
SMARTSM007178.3E-1048101IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-1750108IPR009057Homeodomain-like
CDDcd116606.38E-2050100No hitNo description
PfamPF002492.1E-85199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
FVAESKKETT PTDMGQNMGL KYVDPSGDTS DDNVVTVPTA KGGIRRKHHR AWTLSEVMKL  60
VEGVSKYGAG RWSEIKRLAF ASYSYRTSVD LKDKWRNLLK ASFAQTPTDK G
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.3990.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455128.15e-74PREDICTED: uncharacterized protein LOC105776772
RefseqXP_016698008.16e-74PREDICTED: uncharacterized protein LOC107913858
RefseqXP_017649156.17e-74PREDICTED: uncharacterized protein LOC108489264 isoform X1
RefseqXP_017649157.17e-74PREDICTED: uncharacterized protein LOC108489264 isoform X1
RefseqXP_017649158.16e-74PREDICTED: uncharacterized protein LOC108489264 isoform X2
TrEMBLA0A0D2RHL35e-73A0A0D2RHL3_GOSRA; Uncharacterized protein
TrEMBLA0A0D2UPL63e-73A0A0D2UPL6_GOSRA; Uncharacterized protein
TrEMBLA0A0D2VIS51e-72A0A0D2VIS5_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KAL81e-72A0A1U8KAL8_GOSHI; uncharacterized protein LOC107913858
STRINGGorai.011G058300.12e-73(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.17e-44TRF-like 6