PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca077169G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 182aa MW: 19736.5 Da PI: 8.6138

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca077169G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	37	59	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++sF++ L H+ +H Gh_Sca077169G01 37 HECKTCNRSFPSFQALGGHMASH 59 78******************999 PP
2	zf-C2H2	14.2	0.00013	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Gh_Sca077169G01 95 HECSICGSEFTSGQALGGHMRRH 117 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	5.1E-14	36	61	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	37	59	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	5.85E-10	37	59	No hit	No description
PROSITE profile	PS50157	9.785	37	64	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	39	59	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.85E-10	90	117	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-4	90	117	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.7E-11	95	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	95	117	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.868	95	122	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MANCLIMLAQ SDGPKRSTVE AKFKIATKTN KGELYVHECK TCNRSFPSFQ ALGGHMASHK 60 KPKGAIAEQK RPLVLAVNDA VIALRVSNKK GNKIHECSIC GSEFTSGQAL GGHMRRHRTA 120 SAAAASNQDA MNGDDDIKPR NITPLDLNLP APEDDVRDSM FEFGTPQQAI VFSTPALVDC 180 HY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.6122	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:9132053}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016668868.1	1e-136	PREDICTED: zinc finger protein ZAT5-like
Swissprot	Q681X4	4e-54	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A1U8HY42	1e-134	A0A1U8HY42_GOSHI; zinc finger protein ZAT5-like
STRING	Gorai.006G104800.1	1e-135	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5862	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	5e-54	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]