PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca073981G01 | ||||||||
Common Name | HB1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 166aa MW: 18939.5 Da PI: 8.514 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.3e-18 | 79 | 131 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k Gh_Sca073981G01 79 KKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWK 131 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.5 | 5.5e-41 | 77 | 165 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekk+rl+ eqvk+LE+sFe +kLeperKv+la++Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLk++++alk++n++L++++++L++ Gh_Sca073981G01 77 EKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKKQFEALKADNDALQAQNKKLNA 165 69************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-19 | 68 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.763 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-17 | 76 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.49E-16 | 78 | 134 | No hit | No description |
Pfam | PF00046 | 1.3E-15 | 79 | 131 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 81 | 141 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.4E-6 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.4E-6 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.9E-12 | 133 | 166 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MAFPPHAFMF QPHEDHHNDH LPSPTSLNFL PSCPPQLFHG GGAPFMMKRS VSFSGVDKSE 60 EVHGDDELSD DGSHLGEKKK RLNLEQVKAL EKSFELGNKL EPERKVQLAK ALGLQPRQIA 120 IWFQNRRARW KTKQLEKDYD ALKKQFEALK ADNDALQAQN KKLNAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.18653 | 0.0 | ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF151309 | 0.0 | EF151309.1 Gossypium hirsutum homeobox protein (HB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313679.1 | 1e-119 | homeobox-leucine zipper protein HAT7-like | ||||
Refseq | XP_017609830.1 | 1e-119 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q00466 | 2e-79 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A9PL22 | 1e-118 | A9PL22_GOSHI; Homeobox protein | ||||
STRING | Gorai.006G022100.1 | 1e-118 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3095 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 7e-82 | homeobox 3 |