PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca069306G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 138aa MW: 15285.3 Da PI: 6.7827 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 70.7 | 2.3e-22 | 1 | 42 | 17 | 59 |
ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e Gh_Sca069306G01 1 MGGNAIDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEIEG 42 7*************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.3E-20 | 1 | 40 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-17 | 1 | 42 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.844 | 1 | 39 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.4E-23 | 1 | 40 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-14 | 97 | 137 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-6 | 101 | 136 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MGGNAIDGCG EFMPSGEEGT IEALNCSACN CHRNFHRKEI EGHHKSILPP EALGYPTGTL 60 IHSRAAPTPH QMIMSYNMGS LPSESDEQPE DGGGVVGSRP LQLMKKRFRT KFTQEQKEKM 120 LNFAEKVGWK IQKQEEAV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.13174 | 1e-163 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016677367.1 | 4e-92 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | O64722 | 6e-45 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A1U8IGS8 | 9e-91 | A0A1U8IGS8_GOSHI; zinc-finger homeodomain protein 4-like | ||||
TrEMBL | A0A2P5RCS0 | 4e-91 | A0A2P5RCS0_GOSBA; Uncharacterized protein | ||||
TrEMBL | A0A2P5YLS8 | 3e-91 | A0A2P5YLS8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G090900.1 | 2e-91 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3339 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 2e-47 | homeobox protein 21 |
Publications ? help Back to Top | |||
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