PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca067845G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 127aa MW: 14590.8 Da PI: 11.4496 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 51.6 | 2.4e-16 | 46 | 76 | 48 | 78 |
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfhel efDe+krsCrrrLa+hnerrrk++a Gh_Sca067845G01 46 RFHELPEFDEAKRSCRRRLAGHNERRRKSSA 76 9***************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 12.024 | 1 | 74 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 3.7E-5 | 45 | 61 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.16E-12 | 46 | 77 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-9 | 46 | 73 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MMKRRRKVME GEEQLVAVVG CRRLLVKWKN VGLIYLMPSD TTGAIRFHEL PEFDEAKRSC 60 RRRLAGHNER RRKSSAESSS AAESSSRRGM MISAQLKESH YLADDQRARV NPMAIHGSSS 120 FKRSQIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-11 | 46 | 73 | 57 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16537 | 1e-139 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Increases during floral transition and stay high thereafter. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the rib meristem and inter-primordial tissue of the inflorescence apex. {ECO:0000269|PubMed:10524240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16914499}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040, ECO:0000305|PubMed:16914499}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ569110 | 1e-137 | KJ569110.1 Gossypium hirsutum squamosa promoter binding protein 3 (SBP3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463358.1 | 2e-50 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q9S7A9 | 7e-19 | SPL4_ARATH; Squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A0D2SFJ7 | 3e-49 | A0A0D2SFJ7_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0K0L9U5 | 3e-49 | A0A0K0L9U5_GOSHI; Squamosa promoter binding protein 3 | ||||
TrEMBL | A0A2P5R8C7 | 2e-49 | A0A2P5R8C7_GOSBA; Squamosa promoter-binding-like protein | ||||
STRING | Gorai.013G169800.1 | 6e-50 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM868 | 28 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 4e-12 | squamosa promoter binding protein-like 5 |