PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca060994G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 183aa    MW: 20773.6 Da    PI: 4.8711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca060994G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS142.15.8e-44201831165
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl  A+ v++++ + a   L++l + +s  gd++qR++ayf+ +L arl+   s  y+ +  ++t+    +ee+ a++ ++ vsP+++f+
  Gh_Sca060994G01  20 LIHLLLITATSVDENNVNSALDNLTQLYQSVSLMGDSVQRVVAYFADGLVARLLTRKSPFYDMIMKEPTA----EEEFLAFTCLYRVSPYYQFA 109
                      689****************************************************999***999888886....78889999************ PP

             GRAS  95 hltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerL 165
                      h+taNqaI ea e+e     +++H+iDfd+ +G+QWp+L+q+L++++  ++  slR+Tg+g+    s  el+et++rL
  Gh_Sca060994G01 110 HFTANQAIIEAYEKEeefnnRALHVIDFDVAYGFQWPSLIQSLSEKAsgGNRISLRLTGFGA----SFAELQETENRL 183
                      *************9977777788***********************9634455*********....99********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.9111183IPR005202Transcription factor GRAS
PfamPF035142.0E-4120183IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MLKLDYKRKG VVEDGKALHL IHLLLITATS VDENNVNSAL DNLTQLYQSV SLMGDSVQRV  60
VAYFADGLVA RLLTRKSPFY DMIMKEPTAE EEFLAFTCLY RVSPYYQFAH FTANQAIIEA  120
YEKEEEFNNR ALHVIDFDVA YGFQWPSLIQ SLSEKASGGN RISLRLTGFG ASFAELQETE  180
NRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-242718326179Protein SCARECROW
5b3h_A2e-242718325178Protein SCARECROW
5b3h_D2e-242718325178Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442637.11e-131PREDICTED: scarecrow-like protein 21
TrEMBLA0A2P5QCE81e-130A0A2P5QCE8_GOSBA; Uncharacterized protein
STRINGGorai.009G289600.11e-130(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15761916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.15e-26GRAS family protein