PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca035233G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 208aa    MW: 23441.4 Da    PI: 8.4145
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca035233G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP45.42.2e-143354577
                     TTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP 45 qCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                        rfh+l+efDe+krsCr+rL++hn+rrrk+q
  Gh_Sca035233G01  3 LFCRFHSLEEFDERKRSCRKRLEGHNRRRRKPQ 35
                     557****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114115.272134IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-11336IPR004333Transcription factor, SBP-box
PfamPF031101.8E-7433IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
CSLFCRFHSL EEFDERKRSC RKRLEGHNRR RRKPQSVYPL SLMRPGTYFS DHQGTKSFPF  60
ASLNVPTWPG VNTQEPIVKN DTLQNRTQPT CQSFITAPEG NGGSSSHNVP GDRLVPWIRD  120
ADYALSLLSC MRTQPTPGIG SSNLVQSHSF AFVHPSRLSL ADPVVEPMAS LAVANGRDDR  180
VHCPEMVRMD CGECSKSQDP HTLPFYWH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11532RKRSCRKRLEGHNRRRRK
21533RKRSCRKRLEGHNRRRRKP
31633KRSCRKRLEGHNRRRRKP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223210.0KJ622321.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648342.11e-149PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A2P5VP951e-147A0A2P5VP95_GOSBA; Uncharacterized protein
STRINGGorai.001G057700.11e-129(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-18SBP family protein