PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca028572G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 139aa    MW: 16603.2 Da    PI: 4.6291
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca028572G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-071359246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     + W++ E +l+ +a+  ++ +   +W +Ia ++  g+++k++ +++ +
  Gh_Sca028572G01 13 NEWSPLENKLFEHAFLVFPEEtsdRWQKIADRIS-GKSAKEVEEHFDM 59
                     68*****************99*************.**********966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.005761IPR017877Myb-like domain
SMARTSM007174.7E-61163IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-101368IPR009057Homeodomain-like
PfamPF002491.7E-61360IPR001005SANT/Myb domain
CDDcd001671.21E-41461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MNPQNQNNNN LTNEWSPLEN KLFEHAFLVF PEETSDRWQK IADRISGKSA KEVEEHFDML  60
LHDVYEIEAG RIEIPRYADD SSMLSSTWNS NNQIYFTSKS KHQLDNERKE GSPWTEEEHK  120
YVNSFFLTYL ELNSFFNRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1315771173RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016753015.15e-85PREDICTED: protein RADIALIS-like 4 isoform X2
TrEMBLA0A1U8PPA71e-83A0A1U8PPA7_GOSHI; protein RADIALIS-like 4 isoform X2
STRINGGorai.009G080900.19e-71(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2450834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-28MYB family protein