PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca017163G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 169aa    MW: 19435 Da    PI: 10.4337
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca017163G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-2077127255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp   + k  r++lg+f ta eAaka+++a+ kl+g
  Gh_Sca017163G01  77 HYRGVRRRP-WGKFAAEIRDP---NrKGSRIWLGTFETAIEAAKAYDRAAFKLRG 127
                      7********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-3276136IPR001471AP2/ERF domain
SMARTSM003801.4E-3777141IPR001471AP2/ERF domain
PROSITE profilePS5103224.48777135IPR001471AP2/ERF domain
CDDcd000183.13E-3177135No hitNo description
PfamPF008473.0E-1477127IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2377137IPR016177DNA-binding domain
PRINTSPR003676.9E-147889IPR001471AP2/ERF domain
PRINTSPR003676.9E-14117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MASFGEAPSD LELIKQHLFN DFPSMETFLS PPPTPQFHKQ STLSQRRPSI NVTIPPSKVN  60
ITSAATKAIE EHDEKRHYRG VRRRPWGKFA AEIRDPNRKG SRIWLGTFET AIEAAKAYDR  120
AAFKLRGSKA ILNFPLEIGN SNSTEFQPSN KRKREEEEEE RRKVVKKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3176145470ATERF1
3gcc_A4e-3176145470ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.36790.0boll| ovule| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR9025460.0KR902546.1 Gossypium barbadense cultivar Pima90-53 transcription factor ERFb (ERFb) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744471.11e-120PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY901e-53EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A1U8NZS91e-119A0A1U8NZS9_GOSHI; Ethylene-responsive element binding factor 1.1
STRINGGorai.001G051200.11e-117(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]