PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca008688G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28496.4 Da PI: 6.51 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.4e-12 | 41 | 88 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f+ L llP++ K +K++++ +Av YIk+Lq Gh_Sca008688G01 41 MHIWTERERRKKMRNMFSSLHALLPQL----PAKADKSTVVDEAVTYIKNLQ 88 67778*********************6....39******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-15 | 37 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.884 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-13 | 40 | 92 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-14 | 40 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 41 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-8 | 45 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00241 | 177 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MELEKVSVAE VGEKRSRKGG LKQGKANGGV DHGADQSEHE MHIWTERERR KKMRNMFSSL 60 HALLPQLPAK ADKSTVVDEA VTYIKNLQQT LKTLEKQKLE KLKNSATVDY EQSSIITSQV 120 QPPESREAFF TDNQGPTNNY PMTIDMSQTF PAQASPACFQ TWFSSNVVIS MCGDDAQINV 180 CSPRKPGTFA TILYILEKHQ LEVVSAHIFS DQYRTMYMIH VHAGGASEQF PELLSIEETF 240 KLAAGEMNLC LFSC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016730073.1 | 0.0 | PREDICTED: transcription factor bHLH95-like | ||||
TrEMBL | A0A1U8MX20 | 0.0 | A0A1U8MX20_GOSHI; transcription factor bHLH95-like | ||||
STRING | Gorai.002G135000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5074 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 1e-40 | bHLH family protein |