PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca008309G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 149aa    MW: 16628.4 Da    PI: 8.4911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca008309G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.34.8e-073312255
                     HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +L++l+P++      K +Ka++L +++eY+k+Lq
  Gh_Sca008309G01  3 TLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 31
                     799999997.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.4E-10141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-8135No hitNo description
PROSITE profilePS5088811.947130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-10154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MKTLQKLVPN SSKTDKASML DEVIEYLKQL QAQVQMMSRM NLPSMMLQHQ LQMSMMAPMG  60
MGMSVMDMNF MGRPNIIGIS PVLSNPFMTM NTPWDGSNNN DRLQQAASMT DPLSTFLASQ  120
SQPMTMDAYS RMAAMCQQMQ QPPASSSKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.150032e-58leaf| ovule| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016671928.11e-101PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ386e-33UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A1U8I6S81e-100A0A1U8I6S8_GOSHI; transcription factor UNE10-like
STRINGGorai.008G106900.18e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-31bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]