PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca007830G01
Common Namebnlghi6313
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 761aa    MW: 84112.6 Da    PI: 6.7542
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca007830G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.8e-1970123356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k ++++++q++eLe++F+++++p++++r+eL+++l L+ +q+k+WFqNrR+++k
  Gh_Sca007830G01  70 KFHRHNPHQIHELESFFKECPHPDEKQRRELSRRLALESKQIKFWFQNRRTQMK 123
                      556899*********************************************999 PP
2START163.61.4e-512764952203
                      HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                      +a++a++el+k+a+ + p+W k      e +n +e+ ++f++  +     +++ea r++++v+     lv +l+d + +W e+++    +a t+
  Gh_Sca007830G01 276 VALAAMDELIKMAQMGNPLWIKGFgdgmETLNLEEYKRTFSSFIGmkpsgFTTEATRETAMVPLRGLALVDTLMDAN-RWAEMFPcmisRAVTI 368
                      7899*******************9999999999999999977555999*****************************.**************** PP

                      EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
            START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                      +v+ssg      +alqlm ae+q+lsplvp R   f+R+++q+++ +w+ivdvS++  +  +    ++ +++lpSg++i++++n +skvtwveh
  Gh_Sca007830G01 369 DVLSSGkgvtrdNALQLMEAEFQVLSPLVPiRQIQFIRFCKQHSDSVWAIVDVSINLSNAAN-ALMFANCRRLPSGCVIQDMDNKYSKVTWVEH 461
                      ************************************************************99.9****************************** PP

                      EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
            START 170 vdlkgrlphwllrslvksglaegaktwvatlqrq 203
                       +++++++h l+r+l++sg  +ga++w atl+rq
  Gh_Sca007830G01 462 SEYDESTVHHLFRPLLSSGFGFGAQRWIATLRRQ 495
                      *******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-2055125IPR009057Homeodomain-like
SuperFamilySSF466893.72E-1957125IPR009057Homeodomain-like
PROSITE profilePS5007117.16765125IPR001356Homeobox domain
SMARTSM003891.1E-1566129IPR001356Homeobox domain
CDDcd000868.53E-1868125No hitNo description
PfamPF000469.1E-1770123IPR001356Homeobox domain
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PROSITE profilePS5084838.423266501IPR002913START domain
SuperFamilySSF559612.06E-30267497No hitNo description
CDDcd088754.03E-110270495No hitNo description
SMARTSM002342.5E-31275498IPR002913START domain
PfamPF018522.2E-43276495IPR002913START domain
SuperFamilySSF559612.61E-14538749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MGVDNRTAFL HSKRMASHGE LRLIGENYDP GFIGMMKEDD GYGSSDDFEG ALGNDQDTAD  60
NGRPPKKKKK FHRHNPHQIH ELESFFKECP HPDEKQRREL SRRLALESKQ IKFWFQNRRT  120
QMKTQLERHE NVXNVILKQE NDKLRAENDL LRQAIASAIC NNCGVPAVPD EISYEPSQLM  180
IENSRLKDEL NRARALTNKF LGRHLSSSSA NPSPSPSQGL NSNVEVVVRR TGFCGLNNGS  240
ISLPMGFEFG HGATMPLMNP SFAYEMPYDK SALVDVALAA MDELIKMAQM GNPLWIKGFG  300
DGMETLNLEE YKRTFSSFIG MKPSGFTTEA TRETAMVPLR GLALVDTLMD ANRWAEMFPC  360
MISRAVTIDV LSSGKGVTRD NALQLMEAEF QVLSPLVPIR QIQFIRFCKQ HSDSVWAIVD  420
VSINLSNAAN ALMFANCRRL PSGCVIQDMD NKYSKVTWVE HSEYDESTVH HLFRPLLSSG  480
FGFGAQRWIA TLRRQYSSLA QLMSPDIHGE DINTVGKKSM LKLAQRMAYN FSAGIGASSV  540
NKWDKLNVGN VGEDVRVMTR KNVNDPGEPL GIVLSAATSV WMPITQQTLF GFLRNERMRN  600
QWDILSSGRP MQAMFSVAKG PGQGNCVSIL RGAAVNGSDT NMLILQETWS DACGALIVYA  660
PVDASSIRVV MNGGDSSHVA LLPSGFAILP GVQTDGPSMQ PDIDENTSDG CILTVGFQIL  720
VNSVPTAKLT VESVETVNHL LTCTVEKIKA ALSVTQLGSV E
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.5790.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO333553910.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3384950.0AY338495.1 Gossypium hirsutum homeodomain protein BNLGHi6313 (bnlghi6313) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732453.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1U8K1M70.0A0A1U8K1M7_GOSHI; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
STRINGGorai.006G047300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]