PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca005611G02

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 350aa MW: 39658.3 Da PI: 10.3516

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca005611G02	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.3	2.4e-31	284	341	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ Gh_Sca005611G02 284 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 341 99*********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	7.2E-8	261	280	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.8E-33	270	342	IPR003657	WRKY domain
PROSITE profile	PS50811	29.953	277	343	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-27	280	342	IPR003657	WRKY domain
SMART	SM00774	2.0E-38	282	342	IPR003657	WRKY domain
Pfam	PF03106	2.9E-27	284	341	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MEEVEEANKA AVESCHRVLS ILSQPKDQIQ YRNLMAETGE AVFRFKRVVS LLNTGFGHAR 60 VRKLRRLDTP FPQSILMDNP HHKVIHESSV KELSSHAKNC LYLGNQHQTA QPASSGHYRI 120 LQQHQQQQQL RQRLQLQQQQ MKHQAEMMFR KSNSGISLNF DNSSCTPTMS STRSFISSLS 180 MDGSIANGGG SFHFNGGSRS SDQGSQHKKK CSGRGDDGSV KCGSNGKCHC SKKRLDYLYR 240 IMLLILVLII AFLNWLLFVG RKHRVKRSIK VPAISNKLAD IPPDDYSWRK YGQKPIKGSP 300 HPRGYYKCSS MRGCPARKHV ERCLEEPSML IVTYEGEHNH PRLPSQSTTT

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MEEVEEANKA AVESCHRVLS ILSQPKDQIQ YRNLMAETGE AVFRFKRVVS LLNTGFGHAR  60
VRKLRRLDTP FPQSILMDNP HHKVIHESSV KELSSHAKNC LYLGNQHQTA QPASSGHYRI  120
LQQHQQQQQL RQRLQLQQQQ MKHQAEMMFR KSNSGISLNF DNSSCTPTMS STRSFISSLS  180
MDGSIANGGG SFHFNGGSRS SDQGSQHKKK CSGRGDDGSV KCGSNGKCHC SKKRLDYLYR  240
IMLLILVLII AFLNWLLFVG RKHRVKRSIK VPAISNKLAD IPPDDYSWRK YGQKPIKGSP  300
HPRGYYKCSS MRGCPARKHV ERCLEEPSML IVTYEGEHNH PRLPSQSTTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-20	275	344	7	75	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22208	0.0	boll\| ovule\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF220643	0.0	KF220643.1 Gossypium hirsutum WRKY39 (WRKY39) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017626325.1	0.0	PREDICTED: probable WRKY transcription factor 21
Swissprot	Q9SR07	7e-95	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A0B0NEH2	0.0	A0A0B0NEH2_GOSAR; Putative WRKY transcription factor 21-like protein
STRING	Gorai.004G219400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	7e-87	WRKY DNA-binding protein 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]