PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca005611G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 321aa MW: 35972.8 Da PI: 10.4133

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca005611G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.5	2.1e-31	255	312	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ Gh_Sca005611G01 255 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 312 99*********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	4.3E-18	206	251	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.6E-33	241	313	IPR003657	WRKY domain
PROSITE profile	PS50811	29.953	248	314	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-27	251	313	IPR003657	WRKY domain
SMART	SM00774	2.0E-38	253	313	IPR003657	WRKY domain
Pfam	PF03106	2.5E-27	255	312	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MEEVEEANKA AVESCHRVLS ILSQPKDQIQ YRNLMAETGE AVFRFKRVVS LLNTGLGHAR 60 VRKMRKLQTP FPQSILLDNP HHKATTDNPS KNLQLGPLYL GNNHQTAQPA SSGHHHMLQQ 120 QQQQFRQRLQ LQQQQMKHQA EMMFRKSNSG SSLNFDNSCC TPTMSSTRSY ISSLSIDGSV 180 AKLDGGGGSF HFTGGSRSLD QGPRHKKKCS GRGEDGSVKC GSSGKCHCSK KRKHRVKRSI 240 KVPAISNKLA DIPPDDYSWR KYGQKPIKGS PHPRGYYKCS SMRGCPARKH VERCLEEPSM 300 LIVTYEGEHN HPRLPSQTTT T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-20	246	315	7	75	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19148	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF220642	0.0	KF220642.1 Gossypium hirsutum WRKY39-1 (WRKY39-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017626326.1	0.0	PREDICTED: probable WRKY transcription factor 21
Swissprot	Q9SR07	1e-103	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A0B0P2M0	0.0	A0A0B0P2M0_GOSAR; Putative WRKY transcription factor 21-like protein
STRING	Gorai.004G219300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	2e-83	WRKY DNA-binding protein 21

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]