PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca005054G02

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1131aa MW: 125883 Da PI: 9.2806

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca005054G02	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.4e-09	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e++++a +++G++ Wk++a+ + +R+++++ Gh_Sca005054G02 45 QWSKAEIEQFYKAYREHGKD-WKKVAAAVH-NRSAEMV 80 6***************99.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.34E-9	41	88	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-4	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-5	45	81	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-8	45	80	IPR001005	SANT/Myb domain
CDD	cd00167	5.68E-6	46	80	No hit	No description
Pfam	PF06584	9.1E-31	630	730	IPR033471	DIRP domain
SMART	SM01135	2.1E-50	630	731	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1131 aa Download sequence Send to blast
MAPTRKSKSV NKQYSSVYEV SPDKNAGNSR KSKAKKKLTD KLGTQWSKAE IEQFYKAYRE 60 HGKDWKKVAA AVHNRSAEMV EALYSMNRAY LSLPDGTASV IGLIAMMTDH YNVLGVSDGE 120 RESNKPSDMS EKVQKRKRAK VHLESSKEDV VQPRSIASSE GCLSLLKRAG LNGILPHACR 180 KRTPRVPVSY SYRRDDAESF VPPTKRIKKS EVDDKDDEHV AALTLTGTLQ KGGSPCASRS 240 PYKITERRRS SPVRSYDRML PQSETSKAEL HDSSYECWME GGPGGIELVS GTYARDRGPL 300 MDMDGIGTVE VHRKGKNFYR KKIKVEESKN NLSDDGGEAC SGTEGIVGNA LKGKVDMEIS 360 SAKKKLSSCT ERKRTKKHVL GDQSCALDAL LALANLSSVV PTSITESESS VKLKEDRTTF 420 EADDQSSVPE AASITHHRDK IKQPRPNKKV LNLLNGAEDD TSRKSTVSEP KQQQEPSNNS 480 RKRKQKPYVS KISNSEAPMD SRLRKHFDNE EMAKEEKKYL TKSKCASQQT SFRIPEGSVT 540 NNDPKMAGID SVVSTSQVPA SDPVSLPTKH QSRRKMNLKR ALLSTHKNSS VCTLKNQPNN 600 HSVPPDTPKE MLSSCLSSNL ARRWCCFEWF YSAIDYAWFA KREFVEYLNH VSLDHIPRLT 660 RVEWGVIRSS LGKPRRLSEH FLLEEREKLK QYRESVRQHY TQLRVGTREG LATDLAPPLC 720 VGQRVIAIHP KTREVHDGKV LTVDHDRCRV QFDSPDLGVE FVMDIDCMPL NPLENMPETL 780 KKQNLAFNQF SLAPRGSQGN RHLELGGPEV FTSCGCVENA TSPVSINPIK VDAKRTLLHG 840 KPALPHVVSA HQAAYDQPLR IAHIQGREAD IRAMSELSHA LDKKEALLSE LRNTNDIIEN 900 QNGESCLKVS EHFKKHITTV LVQLKEASGQ ASSALLNLRQ RNTYPANPLL PWQKHPTNLD 960 FLGGLTSCSF DSSLVSPEAG CVVGDIINGS RLKARAMVDA AIKALSSMKE GEDVFKRIGE 1020 ALNIVDKKQI TSDISMPAIK SPEQNQVNGS LSITSKPMAT TGWAPNPKLQ EASNKNEEQV 1080 PLELITSCVS TLLMIQLSKI EIFVLITEIM EDDYEVLYIG VISQINTNPV E

Sequence ? help Back to Top

Protein Sequence Length: 1131 aa Download sequence Send to blast

MAPTRKSKSV NKQYSSVYEV SPDKNAGNSR KSKAKKKLTD KLGTQWSKAE IEQFYKAYRE  60
HGKDWKKVAA AVHNRSAEMV EALYSMNRAY LSLPDGTASV IGLIAMMTDH YNVLGVSDGE  120
RESNKPSDMS EKVQKRKRAK VHLESSKEDV VQPRSIASSE GCLSLLKRAG LNGILPHACR  180
KRTPRVPVSY SYRRDDAESF VPPTKRIKKS EVDDKDDEHV AALTLTGTLQ KGGSPCASRS  240
PYKITERRRS SPVRSYDRML PQSETSKAEL HDSSYECWME GGPGGIELVS GTYARDRGPL  300
MDMDGIGTVE VHRKGKNFYR KKIKVEESKN NLSDDGGEAC SGTEGIVGNA LKGKVDMEIS  360
SAKKKLSSCT ERKRTKKHVL GDQSCALDAL LALANLSSVV PTSITESESS VKLKEDRTTF  420
EADDQSSVPE AASITHHRDK IKQPRPNKKV LNLLNGAEDD TSRKSTVSEP KQQQEPSNNS  480
RKRKQKPYVS KISNSEAPMD SRLRKHFDNE EMAKEEKKYL TKSKCASQQT SFRIPEGSVT  540
NNDPKMAGID SVVSTSQVPA SDPVSLPTKH QSRRKMNLKR ALLSTHKNSS VCTLKNQPNN  600
HSVPPDTPKE MLSSCLSSNL ARRWCCFEWF YSAIDYAWFA KREFVEYLNH VSLDHIPRLT  660
RVEWGVIRSS LGKPRRLSEH FLLEEREKLK QYRESVRQHY TQLRVGTREG LATDLAPPLC  720
VGQRVIAIHP KTREVHDGKV LTVDHDRCRV QFDSPDLGVE FVMDIDCMPL NPLENMPETL  780
KKQNLAFNQF SLAPRGSQGN RHLELGGPEV FTSCGCVENA TSPVSINPIK VDAKRTLLHG  840
KPALPHVVSA HQAAYDQPLR IAHIQGREAD IRAMSELSHA LDKKEALLSE LRNTNDIIEN  900
QNGESCLKVS EHFKKHITTV LVQLKEASGQ ASSALLNLRQ RNTYPANPLL PWQKHPTNLD  960
FLGGLTSCSF DSSLVSPEAG CVVGDIINGS RLKARAMVDA AIKALSSMKE GEDVFKRIGE  1020
ALNIVDKKQI TSDISMPAIK SPEQNQVNGS LSITSKPMAT TGWAPNPKLQ EASNKNEEQV  1080
PLELITSCVS TLLMIQLSKI EIFVLITEIM EDDYEVLYIG VISQINTNPV E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	479	484	SRKRKQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ908228	4e-67	DQ908228.1 Gossypium hirsutum clone LIB5327-014-A1-N1-B10_Gh288 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016718189.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X1
TrEMBL	A0A1U8LY50	0.0	A0A1U8LY50_GOSHI; protein ALWAYS EARLY 2-like isoform X1
STRING	Gorai.007G342200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding