PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca004991G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 692aa MW: 76315.5 Da PI: 6.892

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca004991G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	493	530	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Gh_Sca004991G01 493 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 530 564459******************************87 PP
2	BELL	98.9	4.1e-32	354	421	4	71
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 e q+kkakLl l+eeV++rYk y++q+q+v+ssFe vagl sa+pY+slAlk++ ++Frc+k+ai+++ Gh_Sca004991G01 354 EYQQKKAKLLYLQEEVYRRYKLYYQQMQMVVSSFESVAGLSSATPYVSLALKTVEKNFRCIKNAISDR 421 89***************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.7E-39	258	420	IPR006563	POX domain
Pfam	PF07526	4.2E-38	263	419	IPR006563	POX domain
PROSITE profile	PS50071	12.179	471	534	IPR001356	Homeobox domain
SMART	SM00389	1.8E-8	474	538	IPR001356	Homeobox domain
CDD	cd00086	6.36E-12	474	535	No hit	No description
SuperFamily	SSF46689	5.13E-17	475	540	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-27	477	538	IPR009057	Homeodomain-like
Pfam	PF05920	3.1E-18	491	530	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MSFLGMDMSK FKLESHVAQQ SRRDKLRVHH LGLNPDLVQV RNVRNANLLY DPTFVSPHQE 60 LTEDEESRSR QMPANGSCKV PGDPQSCGDW VMGYGINQNP MLDAAMGHPK PNYSEFCSQD 120 SKRHCGELHF VSSSSLYDVT TASLGTQGLE MASMAHQASA LLCGNGGGAW TNIRPVLEDG 180 QQWADAGTNT TQGLSLTLSS NTTCGAAQFT EDQCCSHRFK ESQDSKALNP AHLYSMQKPS 240 IISKGSGNST CVPLGPFTGY ATILKNSKFL KPAQQLLDQY CHVANSKLAK VCETSDAVIG 300 DIGDLASADD ANAVDMEDRA IKGNNSGASI SSFCSSNEIS VAVGIGSSSS CRPEYQQKKA 360 KLLYLQEEVY RRYKLYYQQM QMVVSSFESV AGLSSATPYV SLALKTVEKN FRCIKNAISD 420 RVRHICRALG EDLLSSTTGA SSSKGDINMS RLKYEVQKSG GVNVGFLEPQ QQGWRPQRGL 480 PERAVAILRA WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH 540 MLESKGLAEN NLNSSKTTEA KSSSTNRPNE DQPIDRSCIN VTSMEQLTCS YVAVAETTGD 600 AHDTERWFHD KPLRMDFRIP TSMEGSVLSF APYEQSRLEM GGLGAVSLTL GLRHGAETAQ 660 AQQHQHRQQQ YQSQEDQLQR PFGGQMVHDF AG

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MSFLGMDMSK FKLESHVAQQ SRRDKLRVHH LGLNPDLVQV RNVRNANLLY DPTFVSPHQE  60
LTEDEESRSR QMPANGSCKV PGDPQSCGDW VMGYGINQNP MLDAAMGHPK PNYSEFCSQD  120
SKRHCGELHF VSSSSLYDVT TASLGTQGLE MASMAHQASA LLCGNGGGAW TNIRPVLEDG  180
QQWADAGTNT TQGLSLTLSS NTTCGAAQFT EDQCCSHRFK ESQDSKALNP AHLYSMQKPS  240
IISKGSGNST CVPLGPFTGY ATILKNSKFL KPAQQLLDQY CHVANSKLAK VCETSDAVIG  300
DIGDLASADD ANAVDMEDRA IKGNNSGASI SSFCSSNEIS VAVGIGSSSS CRPEYQQKKA  360
KLLYLQEEVY RRYKLYYQQM QMVVSSFESV AGLSSATPYV SLALKTVEKN FRCIKNAISD  420
RVRHICRALG EDLLSSTTGA SSSKGDINMS RLKYEVQKSG GVNVGFLEPQ QQGWRPQRGL  480
PERAVAILRA WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH  540
MLESKGLAEN NLNSSKTTEA KSSSTNRPNE DQPIDRSCIN VTSMEQLTCS YVAVAETTGD  600
AHDTERWFHD KPLRMDFRIP TSMEGSVLSF APYEQSRLEM GGLGAVSLTL GLRHGAETAQ  660
AQQHQHRQQQ YQSQEDQLQR PFGGQMVHDF AG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	3e-16	480	538	5	63	Homeobox protein Meis2
4xrm_B	3e-16	480	538	5	63	Homeobox protein Meis2
4xrs_A	3e-16	480	537	1	58	Homeobox protein Meis1
4xrs_B	3e-16	480	537	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11044	0.0	ovule\| root

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580734	6e-71	JX580734.1 Gossypium hirsutum clone NBRI_GE13227 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016732288.1	0.0	PREDICTED: BEL1-like homeodomain protein 8
Refseq	XP_016732289.1	0.0	PREDICTED: BEL1-like homeodomain protein 8
Refseq	XP_016732290.1	0.0	PREDICTED: BEL1-like homeodomain protein 8
Refseq	XP_016732291.1	0.0	PREDICTED: BEL1-like homeodomain protein 8
TrEMBL	A0A1U8MZR7	0.0	A0A1U8MZR7_GOSHI; BEL1-like homeodomain protein 8
STRING	Gorai.003G143600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14321	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	2e-83	BEL1-like homeodomain 8