PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G2529

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 351aa MW: 38091.5 Da PI: 9.6542

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G2529	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.7	4.8e-39	47	170	2	118
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa+ ++tgt++++a+++ + s +ss+s+ s++ Gh_D13G2529 47 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVFAATGTGTIPANFTsLNISLRSSGSSMSASylrntyfnpn 144 789******************************************************************99987777777777555557777776443 PP TCP 89 .............kaaksaakskksqksaasalnlak.esraka 118 + +n+ + +s++++ Gh_D13G2529 145 fttqklrtgsewdQ------------------RNVLDdSSQQQQ 170 33333333333321..................222220222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-39	51	171	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.001	53	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MIMDENGIRR PNFPLQLLEK KEQPRSDPAD VDTSSKPTLE PPSKKPPPKR TSTKDRHTKV 60 EGRGRRIRMP ATCAARVFQL TRELGHKSDG ETIEWLLQQA EPAVFAATGT GTIPANFTSL 120 NISLRSSGSS MSASYLRNTY FNPNFTTQKL RTGSEWDQRN VLDDSSQQQQ QQRRVLFPGV 180 ALSSEDSLNF PGTSSTTLNA FLQAKQEIRD AESADTSIGK RRPEQQESPQ NQVGSYLIQS 240 NTGSIPTSHN PIPATFWIGN QVISGSGTGD PMWTFPSTNN TNMYRGTMSS GVHFMNLAAP 300 MALLPAQQFG SGISAGGGSV TDTHLSMLAS LNAYRPVPGI GVSEPPAGGS H

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MIMDENGIRR PNFPLQLLEK KEQPRSDPAD VDTSSKPTLE PPSKKPPPKR TSTKDRHTKV  60
EGRGRRIRMP ATCAARVFQL TRELGHKSDG ETIEWLLQQA EPAVFAATGT GTIPANFTSL  120
NISLRSSGSS MSASYLRNTY FNPNFTTQKL RTGSEWDQRN VLDDSSQQQQ QQRRVLFPGV  180
ALSSEDSLNF PGTSSTTLNA FLQAKQEIRD AESADTSIGK RRPEQQESPQ NQVGSYLIQS  240
NTGSIPTSHN PIPATFWIGN QVISGSGTGD PMWTFPSTNN TNMYRGTMSS GVHFMNLAAP  300
MALLPAQQFG SGISAGGGSV TDTHLSMLAS LNAYRPVPGI GVSEPPAGGS H

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2412	0.0	boll\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527504	1e-106	HQ527504.1 Gossypium herbaceum clone NBRI_C_EYT27PB01AVN7Y simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465080.1	0.0	PREDICTED: transcription factor TCP15
TrEMBL	A0A0D2W445	0.0	A0A0D2W445_GOSRA; Uncharacterized protein
STRING	Gorai.013G084500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3915	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	9e-40	TCP family protein