PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2411
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 639aa    MW: 70510 Da    PI: 8.2749
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2411genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22111212199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t++  d +g+ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+vvF   + +++ 
  Gh_D13G2411 111 FAKTLTQSDANNGGGFSVPRYCAETIfpaldysADPPVQ--TVVAVDVHGQLWKFRHIYRGTPRRHLLTTGWSAFVNRKKLVAGDSVVFL--RAENGG 204
                  89****************************996555555..8************************************************..347777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                   +v+++r+
  Gh_D13G2411 205 IRVGIRRA 212
                  8****996 PP
2Auxin_resp106.53e-35252329783
   Auxin_resp   7 tksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   +++Fev Y+Pr+  +eF+vk++ v++a+kv+++ GmRfkmafetedss++++  Gt+++v+ +dpvrWp+S+Wr+L+
  Gh_D13G2411 252 GRKPFEVAYYPRTRGPEFCVKASAVNTAMKVPWCCGMRFKMAFETEDSSRISWfVGTISSVQVADPVRWPDSPWRLLE 329
                  4689***********************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-36103213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-28109212IPR015300DNA-binding pseudobarrel domain
CDDcd100178.72E-20110211No hitNo description
PROSITE profilePS5086312.534111213IPR003340B3 DNA binding domain
SMARTSM010191.2E-20111213IPR003340B3 DNA binding domain
PfamPF023621.5E-20111212IPR003340B3 DNA binding domain
PfamPF065072.9E-30252328IPR010525Auxin response factor
PROSITE profilePS5174514.468549639IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MELEKSLDPN LWHACAGSMV QIPPIKSKVY YFPQGHAEHS LNSVDFPFSR QIPPLVLCRV  60
DSVKFMADGE TDEVYAKIML TPLQNNEPDV GDDDGVSNGG CNNIEKKAAS FAKTLTQSDA  120
NNGGGFSVPR YCAETIFPAL DYSADPPVQT VVAVDVHGQL WKFRHIYRGT PRRHLLTTGW  180
SAFVNRKKLV AGDSVVFLRA ENGGIRVGIR RAKLGIGDGD CYGSLGFCGN SKGNGKVKPE  240
EVLEAAKAAS GGRKPFEVAY YPRTRGPEFC VKASAVNTAM KVPWCCGMRF KMAFETEDSS  300
RISWFVGTIS SVQVADPVRW PDSPWRLLEV TWDEPDLLQN VNRVNPWSVE LASNLPAIHL  360
SPFLRPMKKL RLPQHLDGLL VPSFPSKPLI PSSPLYRLSD NAPVGIQGAR QVQFGLPLSD  420
LHLKNNPHSG LCLSGLQRFD LHDRIPDTFT NSRNNLSCFL TMGNSNKSKN PKKCRFLLFG  480
QPILTEQQLS QSSSSEAVSE VVSGNSCKTK DSSDGSGSVI GNQFSPEKSS TAQFLWDRDN  540
RAIEPCMDTG HCKVFMESED VGRTLDLSVL DSYEDLYRRL ANMFGIDRSK MSEHVLYRDA  600
TGAIKRTGDE PFRSRLTGTR TAEIGFRGSN KTGPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-79735051388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5857633e-72JX585763.1 Gossypium hirsutum clone NBRI_GE19427 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724214.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1U8MF780.0A0A1U8MF78_GOSHI; Auxin response factor
STRINGGorai.013G267100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]