PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2393
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 252aa    MW: 29168.8 Da    PI: 7.1013
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2393genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed  lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
      Gh_D13G2393 11 KGPWTEKEDMVLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 58
                     79********************************************97 PP
2Myb_DNA-binding55.71.1e-1764109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l +++++++G++ W++Iar+++ gRt++++k++w++++
      Gh_D13G2393  64 RGKMTPQEEKLVLELHAKWGNR-WSRIARRLP-GRTDNEIKNFWRTHM 109
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.16658IPR017930Myb domain
SuperFamilySSF466891.46E-299105IPR009057Homeodomain-like
SMARTSM007179.7E-151060IPR001005SANT/Myb domain
PfamPF002492.9E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-211265IPR009057Homeodomain-like
CDDcd001671.15E-101358No hitNo description
PROSITE profilePS5129425.02659113IPR017930Myb domain
SMARTSM007177.8E-1763111IPR001005SANT/Myb domain
PfamPF002492.2E-1664108IPR001005SANT/Myb domain
CDDcd001679.16E-1266109No hitNo description
Gene3DG3DSA:1.10.10.609.1E-2466111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEMVKDESCR KGPWTEKEDM VLVNFVHLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP  60
GLKRGKMTPQ EEKLVLELHA KWGNRWSRIA RRLPGRTDNE IKNFWRTHMR KMALGKKRST  120
SPSSSSSSTV TRVDSLPSSG NGKVSFYDTG GPKMAVFDDI KGYSMDEIWK DIDMSEGNTT  180
KLPLSENYSE QGCCNHFSCP SMASSPPWDF SWDYSLWKMD DDDDDDDDDE EERKVFIATT  240
NNQLFNLFVH KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26111114103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165210.0JX616521.1 Gossypium hirsutum clone NBRI_GE61253 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719337.10.0PREDICTED: transcription factor MYB59-like
SwissprotQ9LX821e-88MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1U8LXT10.0A0A1U8LXT1_GOSHI; transcription factor MYB59-like
STRINGGorai.013G265300.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-86myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]