PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G2288

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 486aa MW: 54615.3 Da PI: 8.3875

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G2288	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ ql +Lee++++++ ps e++++LA ++gLte+q++ WF+ rR k+k+ Gh_D13G2288 21 KKRTFKTPAQLLALEEAYKEQKFPSDEMKARLAVQIGLTEKQISSWFCHRRLKDKR 76 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-19	4	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.244	17	77	IPR001356	Homeobox domain
SMART	SM00389	5.3E-18	19	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-17	20	77	IPR009057	Homeodomain-like
Pfam	PF00046	5.8E-16	21	76	IPR001356	Homeobox domain
CDD	cd00086	7.35E-17	21	77	No hit	No description
PROSITE pattern	PS00027	0	52	75	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MEDSGEQQTE ENKGSLDVVN KKRTFKTPAQ LLALEEAYKE QKFPSDEMKA RLAVQIGLTE 60 KQISSWFCHR RLKDKRRDES YPNGRQDHSS GVIQDRGSGL RQDSCGSIKQ GDYRNIDLRE 120 VESRRIYGQE FPAADLKYEC RSHQNPYDDH MEDTSSESNL SLNDQPENGA ITQINPRSTK 180 SIGYKPSGYL KVKGEIENPA ITAVKRQLGR HYKEDGPLLG IQFDSLPPGA FEFPSSSPVN 240 EPMYVGDTRQ THSPDTSGVI KQPSNIVNVH NSKISSQDSD MEGAKFNTVQ GSERRDRKSH 300 HQLKHKSSLD IYNDSTKKST LTDSKRIKTS SKLAVGKMGS DSFPNHPSPY GMKISDEQEK 360 PWLHDDDNHT YKAPKNENLS RTSNLIRGYN ESSSTERGSS ARMGKVEKLG GEWKTKKEYP 420 VTVKTNLKNK LRVSKQVNAQ YPLQDFAAYA PHARLPLLTN QTKGSSMDVP SSFSEDETAE 480 TDSSSD

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MEDSGEQQTE ENKGSLDVVN KKRTFKTPAQ LLALEEAYKE QKFPSDEMKA RLAVQIGLTE  60
KQISSWFCHR RLKDKRRDES YPNGRQDHSS GVIQDRGSGL RQDSCGSIKQ GDYRNIDLRE  120
VESRRIYGQE FPAADLKYEC RSHQNPYDDH MEDTSSESNL SLNDQPENGA ITQINPRSTK  180
SIGYKPSGYL KVKGEIENPA ITAVKRQLGR HYKEDGPLLG IQFDSLPPGA FEFPSSSPVN  240
EPMYVGDTRQ THSPDTSGVI KQPSNIVNVH NSKISSQDSD MEGAKFNTVQ GSERRDRKSH  300
HQLKHKSSLD IYNDSTKKST LTDSKRIKTS SKLAVGKMGS DSFPNHPSPY GMKISDEQEK  360
PWLHDDDNHT YKAPKNENLS RTSNLIRGYN ESSSTERGSS ARMGKVEKLG GEWKTKKEYP  420
VTVKTNLKNK LRVSKQVNAQ YPLQDFAAYA PHARLPLLTN QTKGSSMDVP SSFSEDETAE  480
TDSSSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	77	RRLKDKRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016734218.1	0.0	PREDICTED: uncharacterized protein LOC107944873
TrEMBL	A0A1U8N8L3	0.0	A0A1U8N8L3_GOSHI; uncharacterized protein LOC107944873
STRING	Gorai.013G254100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-75	HB-other family protein