PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2261
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 290aa    MW: 32426.3 Da    PI: 5.025
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2261genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.1e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+++    G g+W+ +ar  g+ R++k+c++rw +yl
      Gh_D13G2261 20 KGLWSPEEDDKLINYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 67
                     678*******************************************97 PP
2Myb_DNA-binding51.52.3e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
      Gh_D13G2261  73 RGAISPEEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 116
                      7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.51567IPR017930Myb domain
SuperFamilySSF466897.81E-2818114IPR009057Homeodomain-like
SMARTSM007172.3E-111969IPR001005SANT/Myb domain
PfamPF002497.0E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-232174IPR009057Homeodomain-like
CDDcd001672.59E-92367No hitNo description
PROSITE profilePS5129425.52568122IPR017930Myb domain
SMARTSM007171.4E-1572120IPR001005SANT/Myb domain
PfamPF002492.0E-1473116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2575123IPR009057Homeodomain-like
CDDcd001673.65E-1177115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMRKPNNGST ITTTNNKLRK GLWSPEEDDK LINYMLTNGQ GCWSDVARNA GLQRCGKSCR  60
LRWINYLRPD LKRGAISPEE EELIVHLHSI LGNRWSQIAA RLPGRTDNEI KNFWNSTIKK  120
RLKNSSPNTI GSSTSNFNKD SNPVGFITME QQGVLLPTYI DLSSTSSNSS LQSTVTNPGT  180
AFGATVGYFA TNVNCMYGEN EMLCGEELYM PPLETVRENL KIENTFESDI TTTTTTNNNN  240
NVDCSMKSEN VMTGAAVGNF WLGEEIKVGD WNLEDLMKDV SSFPFLDFQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271512222128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed specifically in fiber and vessel cells that are undergoing secondary wall thickening in floral stems. Expressed in vessels but not in xylary fibers in the developing secondary xylem of roots. {ECO:0000269|PubMed:19808805}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153550.0JX615355.1 Gossypium hirsutum clone NBRI_GE59296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016734652.10.0PREDICTED: transcription factor MYB46
SwissprotQ9C6U11e-73MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A1U8N6B20.0A0A1U8N6B2_GOSHI; transcription factor MYB46
TrEMBLA0A2P5SPS20.0A0A2P5SPS2_GOSBA; Uncharacterized protein
STRINGGorai.013G251100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61152347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.17e-71myb domain protein 46
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]