PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G2257

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 323aa MW: 36606.8 Da PI: 6.922

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G2257	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.4e-05	162	181	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Gh_D13G2257 162 FSCPLCFKTFNRYNNMQMHM 181 89*****************9 PP
2	zf-C2H2	16	3.5e-05	246	268	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +CgksF + + ++H +++ Gh_D13G2257 246 FMCRKCGKSFAVRGDWRTHEKNC 268 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.6E-5	162	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.61	162	184	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.66	162	189	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	164	184	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.59E-6	227	266	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-4	233	266	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	246	266	IPR007087	Zinc finger, C2H2
SMART	SM00355	37	246	266	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MSDSDPYSNY FNGWFNLNPF NPFFPSPSSS TPPSLAPING YNGFPSSPPL KEALPLLPTR 60 HDEEQQQQQQ DSSSFSAAME MEKKSLEDND ETLTVALHLG LPSPSSCSND LMMVSSRFSP 120 QEVTDDKEDH TIVASEYLSN TLNKGQYWIP TPSQILIGPT QFSCPLCFKT FNRYNNMQMH 180 MWGHGSQYRK GPESLRGTQP TAMLRLPCYC CAPGCRNNID HPRSKPLKDF RTLQTHYKRK 240 HGIKAFMCRK CGKSFAVRGD WRTHEKNCGK LWYCSCGSDF KHKRSLKDHI RAFGNGHSAY 300 GIDSFDEEDE PGSDNEQDNE SSQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016734677.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-134	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1U8N6D6	0.0	A0A1U8N6D6_GOSHI; zinc finger protein WIP2-like
STRING	Gorai.013G250800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-131	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]