PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2241
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 356aa    MW: 40051.8 Da    PI: 7.867
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2241genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.12.9e-104693154
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                 +++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ kl+
  Gh_D13G2241 46 PKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAAMAYDSAAVKLR 93
                 6999**6.666899****999......44**********************9998 PP
2B387.98.1e-28172268184
                  EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+k+ltpsdv+k++rlv+pkk+a ++               gg+  e+++l+++d+   +W+++++y+k+s+++vlt+GW++Fvk+++L+e+D+v+F+
  Gh_D13G2241 172 FQKELTPSDVGKLNRLVIPKKYAVKYfphiceadrqvsaagGGV--EDIELVFYDKLMVTWKFRYCYWKSSQSFVLTRGWSRFVKEKKLNEKDTVTFY 267
                  99*****************************9999999976555..789************************************************9 PP

                  E CS
           B3  84 l 84 
                   
  Gh_D13G2241 268 S 268
                  2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-2246104No hitNo description
PfamPF008474.2E-54693IPR001471AP2/ERF domain
PROSITE profilePS5103217.04247102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1647102IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1547103IPR016177DNA-binding domain
SMARTSM003802.0E-1947108IPR001471AP2/ERF domain
SuperFamilySSF1019361.7E-26170272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-31170273IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-24171267No hitNo description
PROSITE profilePS5086311.462172288IPR003340B3 DNA binding domain
SMARTSM010191.5E-19172277IPR003340B3 DNA binding domain
PfamPF023629.0E-25172268IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVEDDSSTVL NTKLTVSAAE TSGSGNSGYK FRPGKRSRDD QIGSLPKFKG VVPQQNGHWG  60
AQIYANHQRI WLGTFKSENE AAMAYDSAAV KLRSGDSHRN FPWTEQNIQE PDFQSLYSTD  120
DVLNMIRDGS YQAKFEDFVK ILSKRDGKLN TSNNANKKLV HGDKQFPCMQ LFQKELTPSD  180
VGKLNRLVIP KKYAVKYFPH ICEADRQVSA AGGGVEDIEL VFYDKLMVTW KFRYCYWKSS  240
QSFVLTRGWS RFVKEKKLNE KDTVTFYSCE CSGEDQNGKS FFLIDVNYNG ENGLGSSAAA  300
LEEEDRRDDD LAVGLEFNLG STTKGYSNKA IEGFENGGRN VKQKSVTLFG VQINLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-2717127613108DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6016643e-31JX601664.1 Gossypium hirsutum clone NBRI_GE39946 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741259.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-105RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6P51e-106RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A1U8NTG70.0A0A1U8NTG7_GOSHI; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGGorai.013G249100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-108RAV family protein