PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2210
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 297aa    MW: 32884.4 Da    PI: 7.5517
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2210genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.81.1e-083781442
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  +C+ +e+ ++ + C+ +   lC  C   +H+       H +vp+
  Gh_D13G2210 37 LMCDVCEQAPAAFTCKADAAALCVACDADIHSAnhlarrHYRVPI 81
                 58****************************955766667777765 PP
2CCT64.43.4e-22217261145
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                  R a++lRY+eKrk+RkF K++rY+sRKa+AesRpR+KGrFvk+++
  Gh_D13G2210 217 RVARVLRYREKRKKRKFVKTVRYASRKAYAESRPRIKGRFVKRTQ 261
                  89****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-143481IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6233481IPR000315B-box-type zinc finger
PfamPF006431.5E-63781IPR000315B-box-type zinc finger
CDDcd000218.70E-93881No hitNo description
PROSITE profilePS5101716.053217259IPR010402CCT domain
PfamPF062032.5E-16217259IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAAKHCDICK PTATDPDFMC LSYDSSTTVH GGIGRVLMCD VCEQAPAAFT CKADAAALCV  60
ACDADIHSAN HLARRHYRVP IDPFLGPQKE DVIVMGSWSL LPGFNHKLVE TEDLGISEMD  120
PLIDLEYQDG YHVLQHHNLG MESLVPVQIE PATTVPVVNP IHFCQSQSLS HSVSSSSVEL  180
SDGISVSDIS YPLRGTTVDP SVLICNNEAN QVGTMDRVAR VLRYREKRKK RKFVKTVRYA  240
SRKAYAESRP RIKGRFVKRT QIHNRVDHLC NSAISPSTTT TTTTSHTHYY GIVPSFL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.256130.0ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2019630.0KM201963.1 Gossypium hirsutum cultivar acc. TM-1 CONSTANS-like 8 protein gene, complete cds.
GenBankKM2019650.0KM201965.1 Gossypium hirsutum cultivar ZMS12 CONSTANS-like 8 protein gene, complete cds.
GenBankKM2019670.0KM201967.1 Gossypium hirsutum cultivar SM3 CONSTANS-like 8 protein gene, complete cds.
GenBankKM2019690.0KM201969.1 Gossypium hirsutum cultivar JM CONSTANS-like 8 protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465237.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5 isoform X1
TrEMBLA0A0D3R2Z00.0A0A0D3R2Z0_GOSHI; CONSTANS-like 8 protein
STRINGGorai.013G246000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2433134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.14e-30CONSTANS-like 5
Publications ? help Back to Top
  1. Zhang R, et al.
    Molecular evolution and phylogenetic analysis of eight COL superfamily genes in group I related to photoperiodic regulation of flowering time in wild and domesticated cotton (Gossypium) species.
    PLoS ONE, 2015. 10(2): p. e0118669
    [PMID:25710777]