PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2207
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 510aa    MW: 56943.1 Da    PI: 10.2908
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2207genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.93.4e-22153245194
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f +v+ ps+v  ++r+ +p +fa+++  ++++   ltl +++g++W  kl y  +kk++++ l +GW+eFv++n+L++gD++vF+l++  e  ++v
  Gh_D13G2207 153 FMTVMQPSYVRGTCRMFIPSDFARKFLTVHKS--NLTLCNSTGKTWHAKLYYlaNKKPNAH-LYGGWREFVEDNHLNVGDICVFELIKYPEILMKV 245
                  8899**********************666444..6***************88988888887.677********************99865554555 PP
2B356.45.6e-18407502398
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   v  ps+v + + + +p +f +++ +k   s +++l+  +grsW+v++  r++s++   ++ +k W +F+ +n+ ++gD++vF+l+++++  l v ++
  Gh_D13G2207 407 VVIHPSHVRSCSTVHIPEEFGKRYLKK---SGEMMLRVADGRSWKVEYERRGRSKGrkaVFGGKSWGQFAMDNEFEVGDVCVFELMNENGNLLEVVIH 501
                  5667899999999***********533...448***************773333334558888**********************9876665666666 PP

                  - CS
           B3  98 r 98 
                  r
  Gh_D13G2207 502 R 502
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-24147247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-25148249IPR015300DNA-binding pseudobarrel domain
CDDcd100176.59E-24151249No hitNo description
PfamPF023626.5E-20153238IPR003340B3 DNA binding domain
PROSITE profilePS5086314.663153251IPR003340B3 DNA binding domain
SMARTSM010191.9E-15153251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-20398502IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-19400500IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-21403502No hitNo description
SMARTSM010196.8E-19405504IPR003340B3 DNA binding domain
PROSITE profilePS5086313.888405503IPR003340B3 DNA binding domain
PfamPF023624.5E-16407502IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MVVGGHSKEH RQYRWNQELD EFICSAKHDT GGVSGACGCL KPDLLGRMQP LAPTEKQRAA  60
DIVSWSSSRL VSRKSKEKSH LPCPLPRKKM RIDSSNQHEQ NSKLEVLSSG TSPDAQRSVK  120
TKAFSCVQRL AAIEKAHAVQ IASAFESTEN PVFMTVMQPS YVRGTCRMFI PSDFARKFLT  180
VHKSNLTLCN STGKTWHAKL YYLANKKPNA HLYGGWREFV EDNHLNVGDI CVFELIKYPE  240
ILMKVQIYPG VKNASKARGQ QSFGSIVSRV KNRILVSDAE PNCQQSPSSS RDSKDLTDSH  300
IKTLDDSPLD QKTKKKLTRS SVQPCKMTRT SLSGSIQAKG IKHEKGKSLN FQYSTQELGG  360
GLKNSAKGDS GRKSGARRCL KPDPVYQKQR ACTGGGAFRT SNPSFSVVIH PSHVRSCSTV  420
HIPEEFGKRY LKKSGEMMLR VADGRSWKVE YERRGRSKGR KAVFGGKSWG QFAMDNEFEV  480
GDVCVFELMN ENGNLLEVVI HRKLLLVEIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1613024827140B3 domain-containing transcription factor VRN1
4i1k_B4e-1613024827140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637007.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X2
TrEMBLA0A1U8M4Z10.0A0A1U8M4Z1_GOSHI; B3 domain-containing protein Os11g0197600-like
STRINGGorai.013G245600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1837549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-17related to vernalization1 1