PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G2183 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27805.7 Da PI: 4.8965 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.5 | 2.4e-13 | 58 | 100 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI++L Gh_D13G2183 58 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 100 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.24 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-17 | 52 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.20E-13 | 55 | 104 | No hit | No description |
SMART | SM00353 | 2.6E-15 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-17 | 57 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-11 | 58 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MLAMENIENI GDEYKNYWET KYFLENEEYS WPIDEFSGYY DSSSPDGAAS SVAAKNIVSE 60 RNRRKKLNER LFALRAVVPN ISKMDKASII KDAIDYIQEL HNQEGRIQAE ISELESGKLK 120 KNPGFEYDQE LPGLRSKKTK LDNIFDYGGS RACPIEVLEL KVTHMGERTM VVSITCSKKT 180 DTMVRLCEVF ESLKLKIITA NITAVSGKLL KTVFVEADER EKDELKVQIE TAIAALNDPQ 240 SPMSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 56 | 133 | 9 | 80 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 56 | 133 | 9 | 80 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 56 | 133 | 9 | 80 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 56 | 133 | 9 | 80 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 56 | 133 | 9 | 80 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 56 | 133 | 9 | 80 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 56 | 133 | 9 | 80 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 56 | 133 | 9 | 80 | Transcription factor MYC2 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012463465.1 | 0.0 | PREDICTED: transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 1e-93 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A0D2SJE4 | 1e-180 | A0A0D2SJE4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G242800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6367 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 3e-96 | bHLH family protein |