PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1956
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 446aa    MW: 49392.9 Da    PI: 6.4716
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1956genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-073784112154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  Gh_D13G1956 378 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 411
                  469*****************************87 PP
2ELK28.72.9e-10332353122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  Gh_D13G1956 332 ELKHELKQGYKEKIVDIREEIL 353
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.9E-19164208IPR005540KNOX1
PfamPF037901.9E-17166207IPR005540KNOX1
SMARTSM012564.8E-28220275IPR005541KNOX2
PfamPF037917.6E-20224274IPR005541KNOX2
PfamPF037891.0E-6332353IPR005539ELK domain
PROSITE profilePS512139.969332352IPR005539ELK domain
SMARTSM011886.1E-4332353IPR005539ELK domain
PROSITE profilePS5007111.791352415IPR001356Homeobox domain
SMARTSM003895.1E-11354419IPR001356Homeobox domain
SuperFamilySSF466899.84E-16354418IPR009057Homeodomain-like
CDDcd000861.70E-11355416No hitNo description
Gene3DG3DSA:1.10.10.603.1E-25359416IPR009057Homeodomain-like
PfamPF059201.3E-17372411IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAFHHNNHFS DHHQDLPLHH LTEHHHQQAS QLSETNGPNW LNTALLRSQQ PQPAQPHSSQ  60
FSEPNFLNLH TTRAASDSTT GSQAPNQWLS RTSSSLLHRN HSDVIDDVGA AAEAARGGGG  120
ESMVAMESGG SGNNNGIMNN NKSEGVVVES GGGGGDGVVN WQNARYKADI LAHPLCEQLL  180
SAHVACLRVA TPVDQLPRID AQLAQSQHVV AKYSSLSGGS QGVVADDKEL DQFLTHYVLL  240
LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE GTGATMSDDD DDQVDSDANL  300
FDGSLEGPDS MGFGPLILTD SEKSLMERVR HELKHELKQG YKEKIVDIRE EILRKRRAGK  360
LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWNSNPSTS  420
TVSKSKRKRY IYYIYMMNNG CLVGVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408428RKRNWNSNPSTSTVSKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.22960.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667989.10.0PREDICTED: homeobox protein knotted-1-like 4 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1U8HX980.0A0A1U8HX98_GOSHI; homeobox protein knotted-1-like 4 isoform X1
STRINGGorai.013G213900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-171KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]