PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G1716 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 313aa MW: 34707.8 Da PI: 8.395 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.6 | 3.8e-15 | 69 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+ +G+ +W++Ia+++ gR++k+c++rw++ Gh_D13G1716 69 RGHWIPAEDAKLMELVTYYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 114 799*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 122 | 163 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+eE+e l+ a++++G++ W++Iar + gRt++ +k++w+ Gh_D13G1716 122 RNFTEEEEEMLLVAHRLHGNK-WARIARLFD-GRTDNALKNHWH 163 68*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.357 | 64 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-10 | 68 | 117 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.7E-27 | 69 | 162 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.3E-26 | 70 | 122 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.8E-14 | 72 | 132 | No hit | No description |
CDD | cd00167 | 4.02E-10 | 72 | 113 | No hit | No description |
PROSITE profile | PS51294 | 23.805 | 116 | 170 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 120 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.74E-11 | 123 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 123 | 169 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MEQSNKCLSF EPLENRETMR TAGCDGKNGV WGVEEKGLTL NLDGEEDESN KNSSAVSGCK 60 SGNTKLCSRG HWIPAEDAKL MELVTYYGPQ NWNLIAEHLE GRSGKSCRLR WFNQLDPRIN 120 KRNFTEEEEE MLLVAHRLHG NKWARIARLF DGRTDNALKN HWHVITARKH REKSGVYKRK 180 KPSSYASRAL PKGLGLTIVN SACSASDQST ISSNIYQSAK VSSPVHQMDV SRRCSLFENV 240 ATRGIGYVVY QQGLMEAVTS VNRSATSLDS NSEVSAAESV GTNWTSHFIS GESCGNGNEK 300 IPFIDFLGVG RAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-33 | 69 | 169 | 7 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 181 | RKHREKSGVYKRKKP |
2 | 168 | 180 | KHREKSGVYKRKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM052726 | 0.0 | KM052726.1 Gossypium hirsutum LOF-like transcription factor LOF2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016725831.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A1U8MG61 | 0.0 | A0A1U8MG61_GOSHI; transcription factor MYB44-like | ||||
STRING | Gorai.013G196500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-66 | myb domain protein 105 |