PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1566
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 375aa    MW: 41880.2 Da    PI: 7.9075
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1566genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.24.3e-061374655
                 S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
     Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                 +ft++++ e+e+  ++  n+ p +e    LA+k            ++ +q+ +WFqNrR+  
  Gh_D13G1566 13 RFTQTEVAEMEAILQEhhNQMPVREILMSLADKFsesaerkgkiVVQFKQIWNWFQNRRYAI 74
                 69************9777999*********************999999***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.5E-4781IPR001356Homeobox domain
SuperFamilySSF466892.44E-101278IPR009057Homeodomain-like
PROSITE profilePS500719.4751377IPR001356Homeobox domain
CDDcd000861.96E-41375No hitNo description
Gene3DG3DSA:1.10.10.603.8E-71380IPR009057Homeodomain-like
PfamPF167192.5E-41133260IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRHPSSGGP AFRFTQTEVA EMEAILQEHH NQMPVREILM SLADKFSESA ERKGKIVVQF  60
KQIWNWFQNR RYAIRAKSNK VPGKLNITSM PRDDSNPMRN VPQPVAAPVP PHMTAPMPAS  120
TVPGAGRNLS ESYMEFEAKS SRDGAWYDVA TFLAHRYLDA GDPEVQVRIA GFGPEEDEWV  180
NIRKHVRQRS LPCEASECVA VLPGDLVLCF QEGKDQALYF DAHVLDAQRR RHDIRGCRCR  240
FLVRYDHDQS EEIVPLRKVC RRPETDYRLQ QLHAASNLSN DQHKTSTDQS TALAPKIIGS  300
STEAMQKLQN PDQSRTATDS HFNVSVAAQT TNQESKILGI VTTDVTDPRI SPVKNAMAAA  360
ATGIGPGQNV QEAKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461342644134SHH1 SAWADEE
4iur_B2e-461342644134SHH1 SAWADEE
4iut_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.197980.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012463612.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ71e-158SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0D2U2Z90.0A0A0D2U2Z9_GOSRA; Uncharacterized protein
STRINGGorai.013G172000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-144sequence-specific DNA binding transcription factors;sequence-specific DNA binding