PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1452
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 521aa    MW: 57797.1 Da    PI: 7.2307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1452genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-152370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed  l+++v+ +G g+W+++ r  g+ R++k+c++rw ++l
      Gh_D13G1452 23 KGPWTAAEDAVLAEYVRTHGEGNWNAVQRNTGLARCGKSCRLRWANHL 70
                     79******************************************9986 PP
2Myb_DNA-binding49.69.1e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ ++v++++ lG++ W++ a++++ gRt++++k++w++
      Gh_D13G1452  76 KGAFSPEEERIIVELHAILGNK-WARMAARLP-GRTDNEIKNYWNT 119
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3381870IPR017930Myb domain
SuperFamilySSF466891.61E-2821117IPR009057Homeodomain-like
SMARTSM007174.6E-122272IPR001005SANT/Myb domain
PfamPF002498.1E-142370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-232477IPR009057Homeodomain-like
CDDcd001677.75E-102570No hitNo description
PROSITE profilePS5129425.11171125IPR017930Myb domain
SMARTSM007179.3E-1675123IPR001005SANT/Myb domain
PfamPF002491.8E-1476119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2478124IPR009057Homeodomain-like
CDDcd001672.76E-1178119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MMGNNNNNHQ VSTQKEEGVM LKKGPWTAAE DAVLAEYVRT HGEGNWNAVQ RNTGLARCGK  60
SCRLRWANHL RPNLKKGAFS PEEERIIVEL HAILGNKWAR MAARLPGRTD NEIKNYWNTR  120
VKRRQRQGLP LYPPEIQSLY SQTQPVLTPP STSSFSFQHS TTMLTSSSPS PPPRLLSYDP  180
HSTATPPPVQ SPSPASTPPP LPSPSHVSPL QSPHKPSFSS IPLADSFTSN TPSSSLDFYF  240
PRPLPSLEQP LRNKRPRHDE NNTNNGGSSF MLPISSLMKT DPFNPHTVTN NSLNAQHYSN  300
SYCLDQTTFD MASSSRFLQP HFDPGQFIST PRFGYNQLKT ELPSNQIFTQ DGNSQVRLDP  360
KGNNNYSSHN QIQNSNHHSS GLNISGNGLV EDMLQEVQAL NEKNEIMASQ SCLVRPSSSS  420
EGLASGLEAK EELKEQITNT TKHVDYSHVN PSSMAMAIPE WYINNGESSI GQSSTVTYDN  480
LALEFELHDQ IASLLPIDTA SDHHGRSSSS YTWVHSFPGI C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31211245107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6146031e-129JX614603.1 Gossypium hirsutum clone NBRI_GE58120 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704042.10.0PREDICTED: transcription factor MYB28-like
TrEMBLA0A1U8KNJ90.0A0A1U8KNJ9_GOSHI; transcription factor MYB28-like
STRINGGorai.013G159200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-70myb domain protein 101