PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G1296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 182aa MW: 20961.4 Da PI: 7.5 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.1 | 1.7e-07 | 9 | 44 | 1 | 37 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +g W+ +Ed++l+ +++++G +W+ + ++ gR + Gh_D13G1296 9 KGTWSRDEDQKLIAYITRYGIWNWNECPDFLQ-GRRR 44 799*****************99*********9.9976 PP | |||||||
2 | Myb_DNA-binding | 35.6 | 2.1e-11 | 48 | 81 | 11 | 46 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +l+++ k lG++ W+ Ia++++ Rt++++k++w++ Gh_D13G1296 48 RLIHLQKTLGNR-WSVIAARLP-QRTDNDIKNYWNT 81 89**********.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-9 | 4 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.1E-15 | 7 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-10 | 8 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-8 | 11 | 83 | No hit | No description |
PROSITE profile | PS51294 | 12.823 | 39 | 87 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-15 | 47 | 84 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-9 | 48 | 81 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MVRQPYLTKG TWSRDEDQKL IAYITRYGIW NWNECPDFLQ GRRRNPNRLI HLQKTLGNRW 60 SVIAARLPQR TDNDIKNYWN TRLKKRINLE DNNSASATTS ATETNSGIEE KSSGADSSLL 120 FGNIMLDSPV YATFSTLGSN LSVASFLEQA RMIEGLDCEA MSQNSQLCHS HHQQYYDLLD 180 YF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-15 | 5 | 88 | 3 | 109 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016704185.1 | 1e-100 | PREDICTED: transcription factor MYB23-like | ||||
TrEMBL | A0A0D2VFB2 | 1e-132 | A0A0D2VFB2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G143300.1 | 1e-132 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM37191 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.2 | 3e-20 | myb domain protein 16 |