PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G1173
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 313aa    MW: 35441.9 Da    PI: 5.1577
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G1173genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-082462792255
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   +yp++e++ +L++ +gL+++q+ +WF N+R ++
  Gh_D13G1173 246 WPYPTEEDKLKLSEITGLDQKQINNWFINQRKRH 279
                  58*****************************885 PP
2ELK37.16.8e-13199220122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ++K +L+rKYsgyL+sL++EF+
  Gh_D13G1173 199 DIKGMLMRKYSGYLSSLRKEFL 220
                  58*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-1660105IPR005540KNOX1
PfamPF037904.2E-1862103IPR005540KNOX1
SMARTSM012562.1E-24108159IPR005541KNOX2
PfamPF037911.5E-24111158IPR005541KNOX2
PROSITE profilePS5121310.58199219IPR005539ELK domain
SMARTSM011882.4E-6199220IPR005539ELK domain
PfamPF037891.1E-9199220IPR005539ELK domain
PROSITE profilePS5007112.276219282IPR001356Homeobox domain
SMARTSM003891.2E-12221286IPR001356Homeobox domain
SuperFamilySSF466892.35E-19221291IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-27224284IPR009057Homeodomain-like
CDDcd000863.16E-12231283No hitNo description
PfamPF059206.7E-17239278IPR008422Homeobox KN domain
PROSITE patternPS000270257280IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEDLYRLDDP IISCSNGIAR VNNFAAPNFT AADFLSPVDH LLQFDDQEVD TDATGSHMSG  60
LIKSQISNHP RYPNLVSAYI ECQKVVGAPP KLASLLEEIG RENRSVNACS EIGADPELDE  120
FMESYCEVLH RYKEELSKPF NEATTFLSNI KSQLSDLCKG ALTKNLDYPF DKGGGSSVEE  180
LSGGEVEGFE NQDECGRQDI KGMLMRKYSG YLSSLRKEFL KKRKKGKLPK EARVTLLDWW  240
NNHYRWPYPT EEDKLKLSEI TGLDQKQINN WFINQRKRHW KPSEDMKFAL MEGFAGDPMH  300
FGHGVGPGSD NIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214223LRKEFLKKRK
2220224KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.242621e-146ovule
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703787.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP298e-91KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A2P5WM660.0A0A2P5WM66_GOSBA; Uncharacterized protein
STRINGGorai.013G129400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.19e-73KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]