PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G1130

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1137aa MW: 126442 Da PI: 9.6609

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G1130	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	2e-09	45	85	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +W++ E e++++a +++G++ Wk++a+ + +R+ +++ ++ Gh_D13G1130 45 PWSKAEIERFYKAYREYGKD-WKKVAAAVR-NRSTEMVEAFYI 85 7***************99.*****.**99988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.72E-10	40	89	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.946	41	94	IPR017884	SANT domain
SMART	SM00717	4.1E-7	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-6	44	84	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-8	45	86	IPR001005	SANT/Myb domain
CDD	cd00167	6.97E-7	45	84	No hit	No description
SMART	SM01135	2.8E-57	653	754	IPR033471	DIRP domain
Pfam	PF06584	1.8E-33	653	753	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1137 aa Download sequence Send to blast
MAPTRKYKSV NKQYSSKCEV SPDKDAGNSR KSNPKKKLFD KLGHPWSKAE IERFYKAYRE 60 YGKDWKKVAA AVRNRSTEMV EAFYIMNRAY LSLPDGVASV IGLIAMMTDH YSVLGGSDAE 120 IESNGPSKIP RKTQKRKRVK AHFGSSKEDV FLPQSIASTQ GCLSLLKRIG FNGINPHAVG 180 RRTPRVPVSY SYRRDDMENY NPPKKRVKKS EANDNDDEHV AAVTLTGALQ RGSCPQFSQR 240 PYKKAECRRS APVQCYDRML LQSETTKAKL PSSSSKHRIE SRHGGKEPVI GTYIKDTGPT 300 EDMEGAGTVE VREKGKKVYR KKVKAGEFIN NLSDDGGEAC SGIEEGIIDR AVKGKVEMEI 360 SHGKSKLSPW SQRKKSKKIV SGDESASLDA LLALANLSTS ISPASIIESE VSAKFKEDRI 420 ARETDEKPSA SEAASTSHCR DETKHIGLKE KVLNLITEAE DGTSRKSKVG RYSAKDDNVV 480 SEPKQQAEST NNSKKRKSKS FSTSQLQISN PEAQMDSPFI QSFDNEDMAE EMNKSLTKGS 540 SAQSSVQSQQ RKSFRVPEDS LTKNDPKFAE TDSLVSIFQV PAESKLVSLP NKHQSRRKMN 600 LKRALLSTDI NSLNYTLANQ PNKDSLSQDG LKERLSFCLS SNLARRWCSF EWFYSAIDYA 660 WFVKKEFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRF SERFLHEERE KLKQYRESVR 720 QHYAQLRIGT TEGLPTDLPQ PLSIGQRVIA IHPETREVND GKVLDLEHDS FKVQFDRPEL 780 GVELVTDIDC MPLNPLENLL ETLGSQDLAF DKFPATPNVS QVNGHSNFRG SGVYAPSGHP 840 ENATSSVNML ANPIKVDASR NILNAKTSVP SVVAAHQTAN GLPLTMAHIQ GREADIQVMS 900 ELNRALDKKE AILMELRNTN DDILDNKSGG NCLKGSEPFK KHIATELVQL KEANGQVSSA 960 LHNLRQHNAY PANPVSPQQK PPTKSNFLGS RLKAGSMVDA AIKAMSSTKE DEDAFMRIVE 1020 VLDSIDKLQF TPDIRMPVIK SAEPENGSIS YQKHLVSRLP QNNEQVPSEL ITSCVATLLM 1080 IWVHLRIGVA TTINCSASIY ILGSTKLLNI STQERSGEAF ACKFVNYTRI LGLQAAS

Sequence ? help Back to Top

Protein Sequence Length: 1137 aa Download sequence Send to blast

MAPTRKYKSV NKQYSSKCEV SPDKDAGNSR KSNPKKKLFD KLGHPWSKAE IERFYKAYRE  60
YGKDWKKVAA AVRNRSTEMV EAFYIMNRAY LSLPDGVASV IGLIAMMTDH YSVLGGSDAE  120
IESNGPSKIP RKTQKRKRVK AHFGSSKEDV FLPQSIASTQ GCLSLLKRIG FNGINPHAVG  180
RRTPRVPVSY SYRRDDMENY NPPKKRVKKS EANDNDDEHV AAVTLTGALQ RGSCPQFSQR  240
PYKKAECRRS APVQCYDRML LQSETTKAKL PSSSSKHRIE SRHGGKEPVI GTYIKDTGPT  300
EDMEGAGTVE VREKGKKVYR KKVKAGEFIN NLSDDGGEAC SGIEEGIIDR AVKGKVEMEI  360
SHGKSKLSPW SQRKKSKKIV SGDESASLDA LLALANLSTS ISPASIIESE VSAKFKEDRI  420
ARETDEKPSA SEAASTSHCR DETKHIGLKE KVLNLITEAE DGTSRKSKVG RYSAKDDNVV  480
SEPKQQAEST NNSKKRKSKS FSTSQLQISN PEAQMDSPFI QSFDNEDMAE EMNKSLTKGS  540
SAQSSVQSQQ RKSFRVPEDS LTKNDPKFAE TDSLVSIFQV PAESKLVSLP NKHQSRRKMN  600
LKRALLSTDI NSLNYTLANQ PNKDSLSQDG LKERLSFCLS SNLARRWCSF EWFYSAIDYA  660
WFVKKEFVEY LNHVGLGHIP RLTRVEWGVI RSSLGKPRRF SERFLHEERE KLKQYRESVR  720
QHYAQLRIGT TEGLPTDLPQ PLSIGQRVIA IHPETREVND GKVLDLEHDS FKVQFDRPEL  780
GVELVTDIDC MPLNPLENLL ETLGSQDLAF DKFPATPNVS QVNGHSNFRG SGVYAPSGHP  840
ENATSSVNML ANPIKVDASR NILNAKTSVP SVVAAHQTAN GLPLTMAHIQ GREADIQVMS  900
ELNRALDKKE AILMELRNTN DDILDNKSGG NCLKGSEPFK KHIATELVQL KEANGQVSSA  960
LHNLRQHNAY PANPVSPQQK PPTKSNFLGS RLKAGSMVDA AIKAMSSTKE DEDAFMRIVE  1020
VLDSIDKLQF TPDIRMPVIK SAEPENGSIS YQKHLVSRLP QNNEQVPSEL ITSCVATLLM  1080
IWVHLRIGVA TTINCSASIY ILGSTKLLNI STQERSGEAF ACKFVNYTRI LGLQAAS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX576973	1e-146	JX576973.1 Gossypium hirsutum clone NBRI_GE8704 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016703340.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X1
TrEMBL	A0A1U8KLP0	0.0	A0A1U8KLP0_GOSHI; protein ALWAYS EARLY 2-like isoform X1
STRING	Gorai.013G124600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-112	DNA binding