PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G1078 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 205aa MW: 23289.3 Da PI: 7.5838 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 5 | 50 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll+++++++G g W++I+ g++R++k+c++rw++yl Gh_D13G1078 5 AWTEEEDYLLKKCIERYGEGKWHRIPVLAGLKRCRKSCRLRWLNYL 50 7*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.5 | 1.3e-12 | 56 | 109 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqky 47 rg++ +eE l+++++ +lG++ W++Ia +++ gRt++++k++w+ + Gh_D13G1078 56 RGSFAAEEVNLIINLHSLLGNRhafhsiklMWSLIAGRLP-GRTANDVKNYWNCH 109 78999***********************************.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.192 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-13 | 2 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-21 | 5 | 57 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.14E-23 | 5 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.9E-15 | 5 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.25E-11 | 5 | 50 | No hit | No description |
PROSITE profile | PS51294 | 12.488 | 55 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-8 | 55 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-10 | 56 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-21 | 58 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.75E-7 | 61 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGGVAWTEEE DYLLKKCIER YGEGKWHRIP VLAGLKRCRK SCRLRWLNYL RPNIKRGSFA 60 AEEVNLIINL HSLLGNRHAF HSIKLMWSLI AGRLPGRTAN DVKNYWNCHL SKKLNSAPQS 120 EDDQTAAATT TASMKPRRPA HVSPNTQPET SVWAPFHDVQ VNQQGQEVAA EEPGTLVGDL 180 EFDEGGSSKW WDDFIFDMDL WTASL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-19 | 6 | 116 | 10 | 110 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016703354.1 | 1e-137 | PREDICTED: transcription factor MYB114-like | ||||
TrEMBL | A0A1U8KRM9 | 1e-135 | A0A1U8KRM9_GOSHI; transcription factor MYB114-like | ||||
STRING | Gorai.013G118300.1 | 1e-134 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17352 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 9e-52 | myb domain protein 113 |