PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G1045 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 31054.6 Da PI: 6.3447 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.3e-17 | 26 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde l++++k Ggg+W+t +++ g+ R++k+c++rw +yl Gh_D13G1045 26 KGPWTAEEDEVLANYIKIEGGGRWRTLPKRAGLLRCGKSCRLRWMNYL 73 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.8e-15 | 79 | 124 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Gh_D13G1045 79 RGPIAPDEEDLILRLHRLLGNR-WALIAGRIP-GRTDNEIKNYWNTHL 124 566679****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.98 | 21 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-28 | 23 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 25 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-14 | 26 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-21 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.84E-10 | 28 | 73 | No hit | No description |
PROSITE profile | PS51294 | 24.157 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-14 | 80 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-24 | 81 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-11 | 84 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MKKPILLGTS TATSRTPCCS KVGIKKGPWT AEEDEVLANY IKIEGGGRWR TLPKRAGLLR 60 CGKSCRLRWM NYLRPTVKRG PIAPDEEDLI LRLHRLLGNR WALIAGRIPG RTDNEIKNYW 120 NTHLSKNLIS QGIDPRTHKP LNPVSHGSSQ ANQDDDDDVP ESNPNPPSSF KSSELMGEKT 180 NSMETTNLES HQIYQHQQEV GDDCMGQPSS SGNGGDLVEN GNEDHMFCLF LDSLITDNQQ 240 QQQQSNNGDL WEAEIMSPMV EFGNPQNYFN HHQQHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 26 | 128 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016703892.1 | 0.0 | PREDICTED: transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 1e-75 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A1U8KN55 | 0.0 | A0A1U8KN55_GOSHI; transcription repressor MYB5-like | ||||
STRING | Gorai.013G114900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-77 | myb domain protein 5 |
Publications ? help Back to Top | |||
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