PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0902
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 554aa    MW: 58954.1 Da    PI: 5.9
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0902genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09371419355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gh_D13G0902 371 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 419
                  58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17366436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.68E-11366423No hitNo description
PROSITE profilePS5088815.478368418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-17369436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-6371419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MDVGEKDKYE LEKRNDNSLN YQASGMSSAW QFGGSNLTST PMSLVSSDNP LVIGSSSASA  60
SMGDSFCSNL WEHPSNSQNL GFCDINVQNG ASSSNATGIG RGGPASVRGS IDRPFEMGWN  120
ASSSMLKGGI FLPNASGVLP SSLSQLPTDS AFIERAAKFS SFNGGNFSDI VNPFGIPEAM  180
GVYARGVGLM QGPQDVYTIS GIKSISGVES QRSKLITTEA SRDLPAENRA TQESPLKNER  240
NGGSLVRSNE EAKQGNGGSG NESNEAESSG GAGGHEPSAL DGTAGESSAK ILSSKKRKRS  300
VQEAEVDQAK GSQSPVEATK DGAENQQKVD QNQTTMVNKT TAKHGKQGSQ ASDLPKEEYI  360
HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR  420
QVEFLSMKLA TVNPRVDCNI EGLLAKDIIQ SRAGPSTLGF SPDLSVGYPP LHPSQPGLGP  480
GGFPVMENNA DIIRRTLSSH FTPMTGGFKE PNQLSNAWED ELHNVVQMNY GTSTASDSQE  540
VNGSQPSGHT KVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299KKRKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.13161e-145boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468119e-91EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016705245.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_016705246.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_016705247.10.0PREDICTED: transcription factor bHLH49-like
RefseqXP_016705248.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A1U8KW210.0A0A1U8KW21_GOSHI; transcription factor bHLH49-like
STRINGGorai.013G098600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-125bHLH family protein