PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G0896 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 36384.1 Da PI: 6.7474 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.5 | 3.8e-16 | 56 | 105 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f++Lr+l+P+ ++K + a+ L +++eY+++Lq Gh_D13G0896 56 RSKHSVTEQRRRSKINERFQRLRDLIPNT----DQKRDTASFLLEVIEYVQYLQ 105 899*************************8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-19 | 52 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-24 | 52 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.444 | 54 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-13 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.33E-15 | 56 | 109 | No hit | No description |
SMART | SM00353 | 1.6E-12 | 60 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MRTGKGSQEE EEYEEEEFGS KKGGFSSNQT MSFNPNNNST TNKADGKNND KANAIRSKHS 60 VTEQRRRSKI NERFQRLRDL IPNTDQKRDT ASFLLEVIEY VQYLQEKVQK YEDSYQGWSS 120 EPAKLMPWRN SHWHVQSLVG HPQAIKNGSG PGATFARKFD ENNTNINPTV ITSGPNAVET 180 DPIRYVTSKT MDCQTELANN GTHLPIQGEN VLVHPLRRPV SETQSTECLV GNDIPINQQE 240 DLTIEGGTIS ISSVYSQGLL SALAQALQGS GLDLSQANMS VQIDLGKHAN RGLSAKEPHN 300 SPHQAMTHLR DVSSGEDSDH AQKRLKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.7028 | 0.0 | boll| ovule| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016706089.1 | 0.0 | PREDICTED: transcription factor BIM2-like isoform X1 | ||||
Swissprot | Q9CAA4 | 1e-113 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A0D2VD29 | 0.0 | A0A0D2VD29_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G098000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5987 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-87 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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