PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0820
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 474aa    MW: 50652.2 Da    PI: 7.3098
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0820genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.12e-34235292159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDgynWrKYGqK+vkgsefprsYY+Cts+gCpvkkkvers  d++v+ei+Y+g+Hnh+
  Gh_D13G0820 235 VDDGYNWRKYGQKQVKGSEFPRSYYKCTSPGCPVKKKVERSI-DGQVTEIIYKGQHNHQ 292
                  59****************************************.***************8 PP
2WRKY1079.4e-34407465159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Gh_D13G0820 407 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTLGCNVRKHVERAATDPKAVITTYEGKHNHN 465
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-30230294IPR003657WRKY domain
SuperFamilySSF1182901.2E-26233294IPR003657WRKY domain
SMARTSM007746.1E-38235293IPR003657WRKY domain
PROSITE profilePS5081125.029236294IPR003657WRKY domain
PfamPF031062.5E-26236292IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-36392467IPR003657WRKY domain
SuperFamilySSF1182901.23E-29399467IPR003657WRKY domain
PROSITE profilePS5081138.067402467IPR003657WRKY domain
SMARTSM007743.0E-39407466IPR003657WRKY domain
PfamPF031066.9E-26408464IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MGESQEQKPS SQPSKTVAVS RPTITPPPRP FTDALFNGGL GMMGFSPGPM TLVSNLFPDS  60
DELKSFSQLL AGAMASPTSG KIPNFFPLTT TEGQGGVSGS GGGGDDTGSR FRQNKPAGLA  120
IAQPPPMFTL PTGLSPASLL ESPGFSVFSP IAQGPFGMTH QQALAQVTAQ AAQAQCSSAA  180
AASLAPVSAF TADMTTNQQM PISLHSSTVT VNEPSDACQS DHRSQPASLI VDKPVDDGYN  240
WRKYGQKQVK GSEFPRSYYK CTSPGCPVKK KVERSIDGQV TEIIYKGQHN HQPPPPSKHA  300
KDTGSLNGNP GKQGNSESAS QLQCGSSNIL MSKKDQESSQ ATAEHISGTS DSEEAGENEV  360
GVDEKDEDEP DPKRRSTEIR VSEPASSHRT VTEPRIIVQT TSEVDLLDDG YRWRKYGQKV  420
VKGNPYPRSY YKCTTLGCNV RKHVERAATD PKAVITTYEG KHNHNVPAAT TRQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-42235468878Probable WRKY transcription factor 4
2lex_A2e-42235468878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697700.0KF669770.1 Gossypium hirsutum WRKY transcription factor 105 (WRKY105) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704760.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A1U8KQP10.0A0A1U8KQP1_GOSHI; probable WRKY transcription factor 3
STRINGGorai.013G090200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-153WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]