PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G0802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 34359.6 Da PI: 7.2909 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.3e-18 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+ +++++G g+W+t +++ g+ R++k+c++rw +yl Gh_D13G0802 12 KGPWTPDEDQKLLAYIEEHGLGNWRTLPEKAGLQRCGKSCRLRWINYL 59 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 65 | 109 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ +E++ ++++++ lG++ W+tIa++++ +Rt++++k++w+++ Gh_D13G0802 65 RGKFSLQEEQTIIQLHAFLGNR-WSTIAAHLP-NRTDNEIKNYWNTH 109 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.556 | 7 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-31 | 8 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-14 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-16 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.50E-11 | 14 | 59 | No hit | No description |
PROSITE profile | PS51294 | 18.556 | 64 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-16 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 65 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-26 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.57E-10 | 67 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MADCREKMGL KKGPWTPDED QKLLAYIEEH GLGNWRTLPE KAGLQRCGKS CRLRWINYLR 60 PDLKRGKFSL QEEQTIIQLH AFLGNRWSTI AAHLPNRTDN EIKNYWNTHV KKRFTKMGID 120 PTTHKPKSNH VVSPTGRTTL NHMAQWESAR LEAEARLVKD SKNLPSSSSR PSPYQKSCNK 180 GSKSQCLDVV KAWQSVVAGM FATSTNNSNR IIFGPDQSSG NYELDSIIPI GGNVEDELMV 240 GNDRSKCQVP ELNERFDNYM SLHDTTHLWA APIAENDVVE GFPDFLVHDF DYQIDNEESI 300 TV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 10 | 114 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016704155.1 | 0.0 | PREDICTED: uncharacterized protein LOC107919142 | ||||
Swissprot | Q9LE63 | 2e-89 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A0D2SAV6 | 0.0 | A0A0D2SAV6_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8KNY9 | 0.0 | A0A1U8KNY9_GOSHI; uncharacterized protein LOC107919142 | ||||
STRING | Gorai.013G088400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25044 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 2e-89 | myb domain protein 106 |