PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G0785

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 399aa MW: 45085.5 Da PI: 7.6952

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G0785	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.1	1.5e-20	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+t+k Gh_D13G0785 10 KLENTNGRQATYAKRKHGIMKKANELSILCDVEIILLMFSPTNK 53 6799*************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.563	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.9E-29	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.06E-25	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.69E-26	2	82	No hit	No description
PRINTS	PR00404	3.4E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD VEIILLMFSP TNKPSVCIGK 60 RSSIEEIIEK FAQLTPQERA KRCSQIFQAL KKTFKKLDHD VNIHEFLGSR YMTIFILYIC 120 NCYGQDLTNQ ARLLQARLSE IHRRLSCWTD VDKINNVEHL GQMEDSLKDY LNQIRAHKEN 180 LGKQQLLPIE CTSQFQNEMH VPFRMGIEQQ LQSLAWMPNN DSRHMALPED PNLIPPRDVE 240 CSASSSFGSY SGYFGTPKSS ELSSSGQENG ILNDLQLGGQ CPFFSYDLSI LNDRKFPPVA 300 EMNFPETPVD YHVNGVLAGP RAGYDPNQGS WASTSGPCAV TMFDEPLYTG AAIHITCWHG 360 KGLIGEYSQD KKTLDVLTAS MDKIARNLSR ETSPQLSWI

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT YAKRKHGIMK KANELSILCD VEIILLMFSP TNKPSVCIGK  60
RSSIEEIIEK FAQLTPQERA KRCSQIFQAL KKTFKKLDHD VNIHEFLGSR YMTIFILYIC  120
NCYGQDLTNQ ARLLQARLSE IHRRLSCWTD VDKINNVEHL GQMEDSLKDY LNQIRAHKEN  180
LGKQQLLPIE CTSQFQNEMH VPFRMGIEQQ LQSLAWMPNN DSRHMALPED PNLIPPRDVE  240
CSASSSFGSY SGYFGTPKSS ELSSSGQENG ILNDLQLGGQ CPFFSYDLSI LNDRKFPPVA  300
EMNFPETPVD YHVNGVLAGP RAGYDPNQGS WASTSGPCAV TMFDEPLYTG AAIHITCWHG  360
KGLIGEYSQD KKTLDVLTAS MDKIARNLSR ETSPQLSWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-13	1	96	1	94	MEF2C
5f28_B	1e-13	1	96	1	94	MEF2C
5f28_C	1e-13	1	96	1	94	MEF2C
5f28_D	1e-13	1	96	1	94	MEF2C
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM236448	1e-180	HM236448.1 Gossypium hirsutum MADS32 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012465871.1	0.0	PREDICTED: MADS-box protein CMB2-like isoform X1
Refseq	XP_012465873.1	0.0	PREDICTED: MADS-box protein CMB2-like isoform X1
Refseq	XP_016703928.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
Refseq	XP_016703929.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
Swissprot	Q1PFA4	1e-107	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	A0A2P5XVE0	0.0	A0A2P5XVE0_GOSBA; Uncharacterized protein
STRING	Gorai.013G086600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8754	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	5e-98	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]