PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G0783

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 356aa MW: 39260.6 Da PI: 8.1505

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G0783	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.7e-34	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl Gh_D13G0783 44 KPRLKWTPELHQRFVDAVNQLGGPDKATPKSVMRVMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.016	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-32	42	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.73E-17	43	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-24	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-10	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-22	135	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MVSTKKGSKT TYEIQFPACL SYINLVLQNT QNQRMNLVLS TDAKPRLKWT PELHQRFVDA 60 VNQLGGPDKA TPKSVMRVMG IPGLTLYHLK SHLQKYRLGK SLGNNTDYKE MQSSNGNFIR 120 DTSDGIHGHM NESLQIPQAL QMQMEVQQKL HEQIEVQRHL QLRIEAQGKY LQTVLKKAQE 180 TLAGYSSSSA GAELARAELS QLVSMVNTGC TSSSFSELTE VGGSSIIERK PMRGTICSMG 240 SSLTSSESSG RNDKAPLENG NICTQNVELS LMDIQPEKKP LISCASNQAN GKKRSVSKVS 300 DGVCVEQPLA KRLELPEEET GGCLRKSGFL ELFDLNSQCH NDIESGPKAI DLNCRE

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MVSTKKGSKT TYEIQFPACL SYINLVLQNT QNQRMNLVLS TDAKPRLKWT PELHQRFVDA  60
VNQLGGPDKA TPKSVMRVMG IPGLTLYHLK SHLQKYRLGK SLGNNTDYKE MQSSNGNFIR  120
DTSDGIHGHM NESLQIPQAL QMQMEVQQKL HEQIEVQRHL QLRIEAQGKY LQTVLKKAQE  180
TLAGYSSSSA GAELARAELS QLVSMVNTGC TSSSFSELTE VGGSSIIERK PMRGTICSMG  240
SSLTSSESSG RNDKAPLENG NICTQNVELS LMDIQPEKKP LISCASNQAN GKKRSVSKVS  300
DGVCVEQPLA KRLELPEEET GGCLRKSGFL ELFDLNSQCH NDIESGPKAI DLNCRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-21	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-21	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578986	1e-101	JX578986.1 Gossypium hirsutum clone NBRI_GE11130 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016703681.1	0.0	PREDICTED: uncharacterized protein LOC107918599 isoform X1
Swissprot	F4I274	2e-90	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A1U8KMG9	0.0	A0A1U8KMG9_GOSHI; uncharacterized protein LOC107918599 isoform X1
STRING	Gorai.013G086300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-90	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]