PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G0769

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 380aa MW: 42405.2 Da PI: 8.2065

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G0769	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.6	5.1e-53	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 + pGfrFhPtdeelv +yLk+kv++++ ++ e+ik++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++ Gh_D13G0769 14 MLPGFRFHPTDEELVGFYLKRKVQQRPPSM-EFIKQLDIYKYDPWDLPKMATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGN 110 579**********************999.99***********9888999***********************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfykgra kg+ktdW+mhe+rl Gh_D13G0769 111 KCIGLKKSLVFYKGRATKGVKTDWMMHEFRL 141 67*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-58	12	172	IPR003441	NAC domain
PROSITE profile	PS51005	56.974	14	172	IPR003441	NAC domain
Pfam	PF02365	7.0E-26	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MKERSESDKM EEIMLPGFRF HPTDEELVGF YLKRKVQQRP PSMEFIKQLD IYKYDPWDLP 60 KMATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGN KCIGLKKSLV 120 FYKGRATKGV KTDWMMHEFR LPSLADSAPP KIFLEKTLPP NDAWAICRIF KKTNSTAQRA 180 LSQSRVSQVP ETSSSSISEL PSMPLTAKTS LNLNVDLLQT SNGAFSSLDF VPYKPPQHSM 240 SNGDLTSLVF TPLDHTSTDS RAVDVTSMLL NMLSSMLGDH YCGRATDGLH FGGGFTGTLP 300 HEMQGNNMMS GGDHESSLFK SLNVGSHGDD QWGGVRSIGF PISMPLPMNV MGDAWKPSLA 360 WDSSCPSEMS TSFCSTKCCT

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MKERSESDKM EEIMLPGFRF HPTDEELVGF YLKRKVQQRP PSMEFIKQLD IYKYDPWDLP  60
KMATTGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGN KCIGLKKSLV  120
FYKGRATKGV KTDWMMHEFR LPSLADSAPP KIFLEKTLPP NDAWAICRIF KKTNSTAQRA  180
LSQSRVSQVP ETSSSSISEL PSMPLTAKTS LNLNVDLLQT SNGAFSSLDF VPYKPPQHSM  240
SNGDLTSLVF TPLDHTSTDS RAVDVTSMLL NMLSSMLGDH YCGRATDGLH FGGGFTGTLP  300
HEMQGNNMMS GGDHESSLFK SLNVGSHGDD QWGGVRSIGF PISMPLPMNV MGDAWKPSLA  360
WDSSCPSEMS TSFCSTKCCT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	5	179	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	5	179	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	5	179	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	5	179	7	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-53	5	179	7	171	NAC domain-containing protein 19
4dul_B	2e-53	5	179	7	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269\|PubMed:19081078}.
Uniprot	TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269\|PubMed:19081078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847236	0.0	KC847236.1 Gossypium hirsutum NAC domain protein NAC59 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001314086.1	0.0	protein FEZ-like
Refseq	XP_012461836.1	0.0	PREDICTED: protein FEZ
Swissprot	Q9ZVH0	1e-102	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1U8KU62	0.0	A0A1U8KU62_GOSHI; protein FEZ-like
STRING	Gorai.013G085000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-101	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]