PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G0717 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | RAV | ||||||||
Protein Properties | Length: 332aa MW: 37260.1 Da PI: 9.204 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.8 | 6.3e-14 | 48 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g Gh_D13G0717 48 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAARRFRG 96 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 97.4 | 9.3e-31 | 179 | 270 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+ tpsdv+k++rlv+pk++ae+h g +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++ Gh_D13G0717 179 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqtGTAFSKEVLLNFEDVRGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLNAGDIVSFHRSTG 270 89*************************987743444778999**********************************************6644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.9E-17 | 48 | 104 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.24E-26 | 48 | 106 | No hit | No description |
Pfam | PF00847 | 2.5E-8 | 48 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-29 | 49 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.205 | 49 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-20 | 49 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-40 | 173 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-30 | 174 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-27 | 178 | 268 | No hit | No description |
SMART | SM01019 | 1.6E-23 | 179 | 282 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.142 | 179 | 281 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-28 | 179 | 269 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MDGSSCIDDS TTSDSMNVSP LSPLCRVGSG NSGVILDTEA ESRKLPSSKY KGVVPQPNGR 60 WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA ARRFRGRDAV TNFKQAEKTE GDDMEMAFLE 120 SRSKAEIVDM LRKHTYNDEL EQSRRSYGLD GNGKRVVKYN AGFGPFSFGL GLKPREQLFE 180 KAVTPSDVGK LNRLVIPKQH AEKHFPLQTG TAFSKEVLLN FEDVRGKVWR FRYSYWNSSQ 240 SYVLTKGWSR FVKEKNLNAG DIVSFHRSTG PEKQLDIDCK ARTGSVSGSA NPAVPVPFVR 300 LFGATYLIYL AVEVIVLVGV MGKEQEKWSC WN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-55 | 176 | 293 | 11 | 128 | DNA-binding protein RAV1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465027.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | Q9C6M5 | 1e-129 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A2P5R383 | 0.0 | A0A2P5R383_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G080000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-128 | RAV family protein |