PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0650
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 227aa    MW: 26071.8 Da    PI: 4.8177
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0650genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.8e-12350148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+ eEd++l  +v+++G  +W+      g++R++k+c+ rw +yl
      Gh_D13G0650  3 KGEWSVEEDDKLRTYVQKYGHWNWHQLLMFAGLKRCGKSCRWRWMNYL 50
                     799*****************99************************97 PP
2Myb_DNA-binding605.1e-195699146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg++T+eEd l++++++q+G++ W+tIa+ +  gRt++++k++w++
      Gh_D13G0650 56 RGNFTEEEDALIIKLHEQFGNR-WSTIAKSLR-GRTDNEIKNHWHS 99
                     89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.487150IPR017930Myb domain
SuperFamilySSF466893.79E-29297IPR009057Homeodomain-like
SMARTSM007171.7E-9252IPR001005SANT/Myb domain
PfamPF002491.0E-10350IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-21457IPR009057Homeodomain-like
CDDcd001671.05E-6550No hitNo description
PROSITE profilePS5129427.29351105IPR017930Myb domain
SMARTSM007175.3E-1755103IPR001005SANT/Myb domain
PfamPF002491.4E-1656100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2658104IPR009057Homeodomain-like
CDDcd001673.87E-115898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MKKGEWSVEE DDKLRTYVQK YGHWNWHQLL MFAGLKRCGK SCRWRWMNYL RPGLKRGNFT  60
EEEDALIIKL HEQFGNRWST IAKSLRGRTD NEIKNHWHSQ LKKSTKGDEE EKCSSWQSEA  120
TQNENICEGE AESNSIDNMT LGSSPPSSPS PSSSSGSMSS LNAVGRLEDT RLPYLEIYET  180
ESSGDFWSQP FVTDNTSSLE KGGFELPLPY DDMYNDDFAD LLCGLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2611055108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461356.11e-147PREDICTED: transcription factor WER-like
TrEMBLA0A2P5SK221e-153A0A2P5SK22_GOSBA; Uncharacterized protein
STRINGGorai.013G073000.11e-135(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3716622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-44myb domain protein 63