PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0553
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 287aa    MW: 31268.9 Da    PI: 9.7918
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0553genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH413.2e-13110136127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  yk e+Cr++ ++G+C+yG++C+FaHg+
  Gh_D13G0553 110 YKSEICRTWEEFGHCRYGSKCQFAHGK 136
                  99***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.3E-16109141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-10109140IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7109136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.314109137IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10110136IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDSFYKVSNK LNVLNSNIPK LMLPARSRTN YYSSPENLIK YLRSNSLSSS GNNSSSGKSS  60
FRSSVSPQSE KTPVKVVEED VLVMDGVLVA SDTNIAGSGS SSSPGSVGFY KSEICRTWEE  120
FGHCRYGSKC QFAHGKEEVR PSCFSFRSKP EAQMYKSYAS TYGSISRPLN PIRETAATIA  180
QKESSTRPDY TNQRSSSTMK PGNTPLTTNI AMKPKTEKAP ASTIGPYTSA TNGSYWSPQD  240
DGINVTLPSS SPGKTLSRAD IDAYIDSVLY GPTTRRRLPV FSAFSPQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704518.10.0PREDICTED: tristetraprolin-like
TrEMBLA0A2P5QJT80.0A0A2P5QJT8_GOSBA; Uncharacterized protein
STRINGGorai.013G063400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15770815
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-08C3H family protein