PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D13G0207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 30128 Da PI: 9.3647 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.1 | 1e-05 | 165 | 204 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L++A YIk Lq Gh_D13G0207 165 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 204 7999**************99.....9****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.734 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.38E-4 | 165 | 208 | No hit | No description |
SuperFamily | SSF47459 | 9.42E-11 | 165 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MRKAAHLSPL SSQFYNIGNS EAQMPYLDVL MQMESKGNVN GDAFSMEPKI FYNDNQIRDG 60 AFAIPYQSHF NSNFLQDYEY GSSNFDNNFQ QSMSLSSKLA IPYLESESIQ NGRKREIEFN 120 NDPNTALDER NKNKRKKLLT SFEQSHRSSQ ERTEIKDFRL NMPVRRSQKL SDKITALQKL 180 VSPYGKTDTA SVLQEASLYI KLLQEQIQML SSSYKSLRAI HPQEIGKKQQ DLKSRGLCLV 240 PISFTQRVAK EEQSSLEILN NM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.19370 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016665556.1 | 0.0 | PREDICTED: transcription factor bHLH114-like isoform X2 | ||||
TrEMBL | A0A1U8HHI3 | 0.0 | A0A1U8HHI3_GOSHI; transcription factor bHLH114-like isoform X2 | ||||
STRING | Gorai.013G023000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17246 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 2e-22 | bHLH family protein |