PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D12G2468 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 293aa MW: 33044.8 Da PI: 6.851 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.4e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++v ++G g+W++++ g+ R +k+c++rw +yl Gh_D12G2468 17 KGLWSPEEDLKLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 64 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 70 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T++E+e ++ ++++lG++ W+ Ia+ ++ gRt++++k++w++yl Gh_D12G2468 70 RGTFTPQEEETILTLHHLLGNK-WSQIAQNLP-GRTDNEIKNYWHSYL 115 899*******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 11 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.354 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.48E-29 | 15 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.03E-10 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.396 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-26 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 70 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.35E-12 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MVSRPSENNK PKAKHKKGLW SPEEDLKLRN YVLKHGHGCW SSVPINAGLQ RNGKSCRLRW 60 INYLRPGLKR GTFTPQEEET ILTLHHLLGN KWSQIAQNLP GRTDNEIKNY WHSYLKKRIA 120 KAEEMDSQAR SQCTTSSSEN KQSTPSPRIF SDQMPTYESF NHIDKLSVST DRAVPQHVID 180 FSKEPQRSPL PKVLFAEWLS LDQECGPAAA TSYGFNHNSS SNFQDPFMDA FLLNEGTFGG 240 SDLHDGLSNG SANEMSSSLF DFETQISGNE FVGSLSGDDI CSDFNMNNNV MYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-23 | 17 | 119 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016737404.1 | 0.0 | PREDICTED: transcription factor WER-like | ||||
Swissprot | Q9M0K4 | 9e-57 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A1U8NHU7 | 0.0 | A0A1U8NHU7_GOSHI; transcription factor WER-like | ||||
STRING | Gorai.008G277900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 2e-55 | myb domain protein 19 |
Publications ? help Back to Top | |||
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