PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D12G2468
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 293aa    MW: 33044.8 Da    PI: 6.851
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D12G2468genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.4e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++v ++G g+W++++   g+ R +k+c++rw +yl
      Gh_D12G2468 17 KGLWSPEEDLKLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 64
                     678*******************************************97 PP

2Myb_DNA-binding55.11.8e-1770115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T++E+e ++ ++++lG++ W+ Ia+ ++ gRt++++k++w++yl
      Gh_D12G2468  70 RGTFTPQEEETILTLHHLLGNK-WSQIAQNLP-GRTDNEIKNYWHSYL 115
                      899*******************.*********.************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-231167IPR009057Homeodomain-like
PROSITE profilePS5129417.3541264IPR017930Myb domain
SuperFamilySSF466893.48E-2915111IPR009057Homeodomain-like
SMARTSM007171.2E-111666IPR001005SANT/Myb domain
PfamPF002492.1E-141764IPR001005SANT/Myb domain
CDDcd001672.03E-102064No hitNo description
PROSITE profilePS5129426.39665119IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2668119IPR009057Homeodomain-like
SMARTSM007171.9E-1669117IPR001005SANT/Myb domain
PfamPF002491.7E-1670115IPR001005SANT/Myb domain
CDDcd001674.35E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVSRPSENNK PKAKHKKGLW SPEEDLKLRN YVLKHGHGCW SSVPINAGLQ RNGKSCRLRW  60
INYLRPGLKR GTFTPQEEET ILTLHHLLGN KWSQIAQNLP GRTDNEIKNY WHSYLKKRIA  120
KAEEMDSQAR SQCTTSSSEN KQSTPSPRIF SDQMPTYESF NHIDKLSVST DRAVPQHVID  180
FSKEPQRSPL PKVLFAEWLS LDQECGPAAA TSYGFNHNSS SNFQDPFMDA FLLNEGTFGG  240
SDLHDGLSNG SANEMSSSLF DFETQISGNE FVGSLSGDDI CSDFNMNNNV MYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23171197108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737404.10.0PREDICTED: transcription factor WER-like
SwissprotQ9M0K49e-57LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A1U8NHU70.0A0A1U8NHU7_GOSHI; transcription factor WER-like
STRINGGorai.008G277900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-55myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]